1PKO,1PKQ


Conserved Protein Domain Family
IgV_MOG_like

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cd05713: IgV_MOG_like 
Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)
The members here are composed of the immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Statistics
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PSSM-Id: 409378
Aligned: 34 rows
Threshold Bit Score: 165.827
Created: 31-Aug-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:Fab binding site [polypeptide binding site]
Evidence:
  • Structure:1PKQ_E; Rat MOG extracellular domain interacts with antigen binding fragment (Fab) of mouse monoclonal antibody,8-18C5; contacts based on 3.5 A distance.
  • Comment:In rat MOG, a strained ligand-binding loop forms the upper edge of the binding site. It has been reported that the sequence of this loop, RDHSYQEE, appears unique for MOG.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      ##                  #          #                  
1PKO_A         7 FRVIGPGHPIRALVGDEAELPCRISPGKNATGXEVGWYRSpfSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA 86  Norway rat
1PKQ_E         7 FRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSpfSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA 86  Norway rat
BAB71365      38 VKVLGPEYPILALVGEEVEFPCHLWPQLDAQQMEIRWFRSqtFNVVHLYQEQQELPGRQMPAFRNRTKLVKDDIAYGSVV 117 human
Q6UXE8        19 WQVTGPGKFVQALVGEDAVFSCSLFPETSAEAMEVRFFRNqfHAVVHLYRDGEDWESKQMPQYRGRTEFVKDSIAGGRVS 98  human
Q13410        29 FDVIGPPEPILAVVGEDAELPCRLSPNASAEHLELRWFRKkvSPAVLVHRDGREQEAEQMPEYRGRATLVQDGIAKGRVA 108 human
O70355        29 FRVVGPNLPILAKVGEDALLTCQLLPKRTTAHMEVRWYRSdpDMPVIMYRDGAEVTGLPMEGYGGRAEWMEDSTEEGSVA 108 house mouse
XP_001378074  48 FTVIGPQQPIVAFVGTEVTLPCHLHPQLDATYMEVVWFHGqhSNVVHRYKYAQDYLKYQHPDYRGRTEFLRENISHGSVA 127 gray short-tail...
EDM04563      33 FRVLGPPDPLLATVGQDKELPCKLSPNISAEGMELRWYRDkpSSAVHVYKNGKDVYDEQMTEYKGRTTFNGNRVARGEAA 112 Norway rat
XP_001520542  56 FHVNGPVQPVLVMMGEDATFFCYLSPKINAESMEVRFFKNqmGAVVHLYKHGEEPDEEQLQEYRGRTQLVRDNITEGRVA 135 platypus
XP_001506114  16 FSARAQVPSVAGLVGDVAKLSCLLTPPQSLANLEVRWFRGsyEFVVLLKEKGVDQPGPQLPQYRGRSHLLSGDNGDGVVT 95  platypus
Feature 1                          ## ## ##        
1PKO_A        87 LRIQNVRFSDEGGYTCFFRDhSYQEEAAVELKVE 120 Norway rat
1PKQ_E        87 LRIQNVRFSDEGGYTCFFRDhSYQEEAAVELKVE 120 Norway rat
BAB71365     118 LQLHSIIPSDKGTYGCRFHSdNFSGEALWELEVA 151 human
Q6UXE8        99 LRLKNITPSDIGLYGCWFSSqIYDEEATWELRVA 132 human
Q13410       109 LRIRGVRVSDDGEYTCFFREdGSYEEALVHLKVA 142 human
O70355       109 LKIRQVQPSDDGQYWCRFQEgDYWRETSVLLQVA 142 house mouse
XP_001378074 128 LRLHQIRPSDEGKYRCFFESpSHYNEAEFQLKVI 161 gray short-tailed opossum
EDM04563     113 VKIHNVTMFDNGTYHCVFKEhTSYDQATLWLKVA 146 Norway rat
XP_001520542 136 LRLERVTPSDSGLYSCGFHSeIYYSETTWVLQVA 169 platypus
XP_001506114  96 LQLKDLRPGDEGNYTCFFRSrDFYEQAVVELNVT 129 platypus

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