Conserved Protein Domain Family
RRM_RBM48
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cd12442: RRM_RBM48 
RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins
This subfamily corresponds to the RRM of RBM48, a putative RNA-binding protein of unknown function. It contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Links
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Statistics
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PSSM-Id: 409876
Aligned: 26 rows
Threshold Bit Score: 136.571
Created: 15-May-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q5RL73        36 VKVYTINLESQYLLIQGVPav---gVMKELVERFAlYGAIEQYNALDEYPae--------------dFTEVYLIKFMNLq 98  human
AAQ65149      11 VRVYTVCDESRYMIVRNVPal---gCGDDLMRLFMtYGEVEECKPMDAEDca--------------eFTDVYWIKFRLIt 73  thale cress
EFX68564      34 VKVYSVVDESQYLLIDKVPai---aVTAELETLCQgFGSIEYLKHLPDYPte--------------kFCEVFQVKFHTIq 96  common water flea
GAA55278       3 TQVYTIATESTYLLFFGVPsi---dLEQALKDRCKrFGTVERITKLSEYPnk-------------eeFTDVFLVKFPSVq 66  Clonorchis sine...
XP_003378034  30 VKVFTVSSESKYLLIQKVPsl---nVGKELLNRCEnFGVVEKTWILSDYPcd--------------pFTEAHVVCYKNIv 92  Trichinella spi...
EGZ16240       6 VRVFTVASESRYVVVRNVPal---gVIEDLLKRLSlYGKVCEYRLLDHADdrqaalrfeqaededneFTDTVWVQYETVn 82  Phytophthora sojae
XP_024398085  15 VKVYTVCQESRYLIVRNVPtl---gCVDELVKLFAlYGPIEEHRLMDEEEce--------------eFTDVYWLKFSSIa 77  Physcomitrella ...
XP_002980340   5 VKVYTVCDESRYMLVKNVPal---gCSSELLQLLGsFGHIEEYLLLDDEEce--------------pYTDVYWIKFADIa 67  Selaginella moe...
OTF69808      11 IKVFTIADESYYLLIQKVPtlsgvnVDEDLRNLCDtFGTIEEFELVDYPQre--------------sFTNVYLVKYERIi 76  Euroglyphus maynei
XP_004365920 136 VKVYTIADESKFLLLLRVPal---kLEQQLCDLVTaQGQVESLRRLDEYPcd--------------qFQEAFLAKFTQLp 198 Capsaspora owcz...

Q5RL73        99 SARTAKRKMDEqsFFGGLLHVCYAPEFETVEETRKKL 135 human
AAQ65149      74 NARFAKRKLDEssFLGNRLQISYAPEYENVNDTKDKL 110 thale cress
EFX68564      97 SARFAKRKMDDrnFYGGTLHVCYAPELETLNDTRSKL 133 common water flea
GAA55278      67 IARRAKRSLDNsnFYGGQLHVCYAPEYETVAECRVKL 103 Clonorchis sinensis
XP_003378034  93 DARRAKRFIDNlsFYGSLLHVSYAPEYESVDETEQKL 129 Trichinella spiralis
EGZ16240      83 NARHAKARGVQkpFYGSRLQISYAPQFESHEDTADKL 119 Phytophthora sojae
XP_024398085  78 NARFAKRKLDDypFLGQLLQVTYAPNFEDVQDTLVKL 114 Physcomitrella patens
XP_002980340  68 HARAAKRNLDDfqFFGNLLQVSYAPKYESLADTKHKL 104 Selaginella moellendorffii
OTF69808      77 DAIRAKKRLDDyeFLGSILHVCYAPEHETIDDIRKKL 113 Euroglyphus maynei
XP_004365920 199 VARAAKRQLDGhvFFGTPLHVCYAPEYETLADLREKF 235 Capsaspora owczarzaki ATCC 30864
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