1GBG,1GBG,1GLH,1MAC,1U0A


Conserved Protein Domain Family
GH16_lichenase

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cd02175: GH16_lichenase 
Click on image for an interactive view with Cn3D
lichenase, member of glycosyl hydrolase family 16
Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Statistics
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PSSM-Id: 185684
Aligned: 26 rows
Threshold Bit Score: 291.097
Created: 26-Oct-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1GBG; lichenase binds glucan polymer
  • Citation:PMID 7589539
  • Structure:1UOA; Paenibacillus macerans 1,3-1,4-beta-glucanase with bound substrate, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           # #   #                                      # #             
1GBG           6 FYEPFNNYNt-gLWQKADgYSNGnmFNCTWrANNVSMtslGEMRLSLTSpsy------nkFDCGENRSVQTYGYGLYEVN 78  Bacillus lichen...
1GBG           6 FYEPFNNYNt-gLWQKADgYSNGnmFNCTWrANNVSMtslGEMRLSLTSpsy------nkFDCGENRSVQTYGYGLYEVN 78  Bacillus lichen...
P33693        38 FKDDFDTLDt-rVWFVSDgWNNGghQNCTWsKKQVKTv-dGILELTFEEkkvk----ernFACGEIQTRKRFGYGTYEAR 111 Sinorhizobium m...
YP_001168168  33 FRETFDEIDg-eRWYISDgWTNGehQNCTWsSNAVRAe-dGLLRLLYLPdtsg----egqHRCGEVQTEQRYLHGTFETR 106 Rhodobacter sph...
ZP_01751240   42 FFDDFETIDe-tLWGISDgWVNGdwQNCLWsGDNVAVq-nGILLLDFAIqpne----krdYTCGEIQSRHVYGYGTYEAR 115 Roseobacter sp....
YP_001757249  45 FVELFSSLNd-rRWYVSDgWVNGdwQGCTWsKHRARIatpGALSLSLTDityk----erpFSCAEIQTRERYGYGTYEVR 119 Methylobacteriu...
YP_761292     31 FLTRLETPDadsMLYASNyDVKDshYGCHWrGENVEKt-pSGALLAIHRvkga----sqpCTAAEMQTAGHYSYGRYEVI 105 Hyphomonas nept...
YP_761340     60 LQHFSKDHDp-tRWHKSNlSYPG--AHPAWlSRQIHFf-dDRVELELRRmrvg----dktLAGAEYQRRGFYSFGRFEVV 131 Hyphomonas nept...
ZP_01868659   23 FDDPLTSLDt-nRWFIADgWENGypFLNRWqHDHAEFs-pQGLALNLSNiidnh--gypeIVSGEIRTQGFYGNGCFEVE 98  Vibrio shilonii...
ZP_01219767   28 FDDPLTNMNd-qLWWLADgWSNGfpFINRWeSEAISFs-tNGMAITLSNtpdstdpqnltFQSGELRSNDFYSYGCFEAE 105 Photobacterium ...
Feature 1                  # # # #             # # # #                                           
1GBG          79 MKPAKn-VGIVSSFFTYTgpt-----dgtPWDEIDIEFLGKDttKVQFNYYTn---GVGNHEKIVNLGFDaansYHTYAF 149 Bacillus lichen...
1GBG          79 MKPAKn-VGIVSSFFTYTgpt-----dgtPWDEIDIEFLGKDttKVQFNYYTn---GVGNHEKIVNLGFDaansYHTYAF 149 Bacillus lichen...
P33693       112 IKAADg-SGLNSAFFTYIgpa-----dkkPHDEIDFEVLGKNtaKVQINQYVs---AKGGNEFLADVPGGanqgFNDYAF 182 Sinorhizobium m...
YP_001168168 107 MRTDHrkSGLNAAFFTYIgpv-----hdqPHDEIDFEILTRNtaSVDVNTYVs---GEPKNRHVVPLDPPsdegWHTFSF 178 Rhodobacter sph...
ZP_01751240  116 FRTAAg-TGLNAAFFTYIgpq-----hgkRHDEIDFEVLTRDttAVSLNTYVd---SAPKNGKRVPLPQPaddgFITYSF 186 Roseobacter sp....
YP_001757249 120 MRAGAg-SGMVSAFFTYNgpen---gdrrTNDEIDFEWLGKDtsKVQLNYFVg---GVGEHVSLDALGFDaattTADYAF 192 Methylobacteriu...
YP_761292    106 MRPARg-SGLVSSFFTYTggy-----fgdPHDEIDIEFLGKDttRIHFNYFRk---GKTGADEIFDLPFDaadaDRLYAF 176 Hyphomonas nept...
YP_761340    132 MTPAPg-SGTVSSLFTHThaq-----fgdPHDEIDIEFLGKDlrMFAANYFTd---GAPHDTIPVRLPFDaseeIHLYAF 202 Hyphomonas nept...
ZP_01868659   99 MKPVKa-EGVVSAFFLFAgpydqpeggngIHNEIDIEFIGLNtnLVQFNFWSnddsYEQRNEYIHYLDFDaadeFHKYAI 177 Vibrio shilonii...
ZP_01219767  106 IKPAAa-DGVITSFFLFAgpydrtetsngKHNEIDIEFLGNNtdLLQINYWTnddnYTSDHARIIFLDFDasedFHRYGI 184 Photobacterium ...
Feature 1                                             # # #                                 
1GBG         150 DWQPNSIKWYVDGQLKHTATt-------qIPQTPGKIMMNLWNGag--vdEWLGSYng--vTPLYAHYNWVRYTK 213 Bacillus licheniformis
1GBG         150 DWQPNSIKWYVDGQLKHTATt-------qIPQTPGKIMMNLWNGag--vdEWLGSYng--vTPLYAHYNWVRYTK 213 Bacillus licheniformis
P33693       183 VWEKNRIRYYVNGELVHEVTdp-----akIPVNAQKIFFSLWGTdt--ltDWMGTFsy--kEPTKLQVDRVAFTA 248 Sinorhizobium meliloti
YP_001168168 179 IWEPERLRWFVDGELVHEATe-------tLPVAPQKIFFSHWSTdv--ltEWMGAYeq-peGPVALEVDWVSWTA 243 Rhodobacter sphaeroi...
ZP_01751240  187 VWEPDGIRWYVDGVMMHETPpg-----avLPENEQKIYASFWGSds--fpNWMGPFae-peTNLTMQVDWIAFTA 253 Roseobacter sp. CCS2
YP_001757249 193 EWLPDRLRWYVNGRLLREVIgtp---drpIPSHPSKIMLSVWSGqgpdfaSWLGPTey-sgQPVTALFERVAFTR 263 Methylobacterium rad...
YP_761292    177 EWTPEGITWFVEGVPYYTTPaed----sgLPVAPGRVYMNVWAGepw-ieQWTGTPty--rSGAGAHYSCVSFVP 244 Hyphomonas neptunium...
YP_761340    203 EWEPDEIRWFVNDELVHTATakd----hpIPQSPSRIIISLWSGspa-qyDWHGKPtf--eDGTRAAFYCVSFQK 270 Hyphomonas neptunium...
ZP_01868659  178 EWNRNTIKWYIDDELVYKVRntetqpipsQSDTKLRAMMNIWATape-lsNWAGLYdqstgAHHSAHYRNFRFTR 251 Vibrio shilonii AK1
ZP_01219767  185 KWTKHAIQWFIDGKLVFKVKntssdpipkSTDSPLRIMANIWATdse-isGWAGEFdq-nsVPITAEYRNIRYIK 257 Photobacterium profu...

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