1J46,1O4X


Conserved Protein Domain Family
HMG-box_SoxA_SoxB_SoxG

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cd22028: HMG-box_SoxA_SoxB_SoxG 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in group A, group B and group G of SRY-related high-mobility group (HMG) box (Sox) transcription factors
This subfamily includes SoxA, SoxB, and SoxG proteins. SRY is the only member of group A SRY-related high-mobility group (HMG) box (Sox) transcription factors. SRY, also called testis-determining factor, is a transcriptional regulator that controls a genetic switch in male development. It promotes DNA bending and is also involved in pre-mRNA splicing. The SRY HMG box recognizes DNA by partial intercalation in the minor groove. It binds to the DNA consensus sequence 5'-[AT]AACAA[AT]-3'. SoxB transcription factors play critical roles in the regulation of neurogenesis. They can be divided into two main subgroups, SoxB1 (Sox-1/Sox-2/Sox-3) and SoxB2 (SOX-14/SOX-21). SoxB1 proteins suppress neurogenesis by maintaining neural cells in an undifferentiated state. SoxB2 proteins may have the opposite activity and promote neuronal differentiation. SOX-5 is the only member of group G Sox transcription factors. It is also called SOX-12, SOX-20, SOX-26, or SOX-27. SOX-5 is a crucial transcription factor involved in the regulation of embryonic development and in cell fate determination. It binds to the 5'-AACAAT-3' sequence. SOX-15 can be a tumor suppressor in multiple cancer types.
Statistics
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PSSM-Id: 438837
Aligned: 23 rows
Threshold Bit Score: 126.314
Created: 5-Jul-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 30 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1O4X; Homo sapiens SOX-2 binds DNA, contacts at 4A.
  • Structure:1J46; Homo sapiens SRY binds DNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ## #####   #  ##      ######  ##  #  ##      #          #           ######
1J46_A         4 RVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEaEKWPFFQEAQKLQAMHREKYPNYKYRPRRK 79  human
1O4X_B         7 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEtEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 82  human
O60248        48 KVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEdEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123 human
TRY67239      28 RIKRPMNAFMVWSRIQRRKISLENPKLHNSEISKHLGFEWKFLTEdKKRPFIDEAKRLRAQHLKDHPNYKYKPRRR 103 Tigriopus californicus
XP_006815223   5 RIKRPTNAFMVWSRSQRRKVRQINPKLHNSEISKQLGIEWKQMTEmEKRPFIDEANRLKQQHAKEHPDYKYQPKRK 80  Saccoglossus kowale...
XP_009028966   1 QVKRPMNAFMVWSRVERRKISQANPTMHNSDISKRLGSEWKAMPEtQKKHYIEEAKRLRSVHMTEHPGYKYKPRRR 76  Helobdella robusta
NP_001274289  64 HVKRPMNAFMVWSREKRRKMAQINPRMHNSEISKILGSEWKRMGEsEKGPYVLEAKRLQTQHSIEYPNYKYKPRRR 139 Hydra vulgaris
KPP57868      46 KVKRPMNAFMVWSRIQRKKVAQENPKMHNSEISKRLGVEWKLLGEvEKKPFMDEARRLRAQHLKDYPDYKYKPRRR 121 Asian bonytongue
KYQ49282      70 HIKRPMNAFMVWAREKRKLISQENPKMHNSEISKMLGVMWKELTEeDKIPYIEKSKRLRIQLLKDHPDYKYKPRRK 145 Trachymyrmex zeteki
CBY22753       7 RVKRPMNAFMVWSREQRKILSKQFPKMHNSEISRNLGEKWRQLNEdEKVPFVDEAKRLRAQHMKEHPDYKYRPRRR 82  Oikopleura dioica

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