Conserved Protein Domain Family
HCoV-like_M

?
cd21568: HCoV-like_M 
Membrane (or Matrix) protein from human coronavirus and related betacoronaviruses in the A lineage
This group contains the Membrane (M) protein of human coronaviruses (HCoVs), HCoV-OC43 and HCoV-HKU1, and similar proteins from betacoronaviruses in the embecovirus subgenera (A lineage). There are five essential genes in CoVs that result in the following gene products: Spike (S) protein, Membrane (M) glycoprotein, Nucleocapsid (N), Envelope (E) protein, and the Orf1ab (a large polyprotein known as replicase/protease); all are required to produce a structurally complete viral particle. The M protein, a triple-spanning membrane protein, is the most abundant protein in the virion. It plays a central role in virion assembly and morphogenesis, and it defines the shape of the viral envelope. It is regarded as the central organizer of CoV assembly, interacting with all other major coronaviral structural proteins and turning cellular membranes into workshops where virus and host factors come together to make new virus particles. While homotypic interactions between the M proteins are the major driving force behind virion envelope formation, it needs to interact with other coronaviral structural proteins for complete virion formation. The interaction of the Spike protein with M is not required for the assembly process. However, binding of M to N protein stabilizes the nucleocapsid (N protein-RNA complex), as well as the internal core of virions, and thereby promotes completion of viral assembly. Thus, the M protein, and its interactions with other structural proteins, is necessary for the production and release of virus-like particles.
Statistics
?
PSSM-Id: 394854
Aligned: 55 rows
Threshold Bit Score: 334.839
Created: 13-Apr-2020
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q01455     7 PAPVYIWTADeAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGLS 86  Human coronavirus OC43
AAY33957   7 PAPVYTRTADeAIKFLKEWNFSLGIILLFITVLLQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Bovine coronavirus
P69599     7 PAPVYTWTADeAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Bovine coronavirus ...
AJL33726   7 PAPVYTWTADeAIKFLKEWNFSLGIILLFITVILQFGYTSRSMVVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Bovine coronavirus
AZU96329   7 PAPVYTWTADeAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILTLMWPLTIILTIfNCVYALNNvYLGLS 86  Yak coronavirus
ABG78752   7 PAPIFTWTADeAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYASNNvYLGFS 86  Canine respiratory ...
ACL13000   7 PAPIYTWTADeAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Canine respiratory ...
AQT26503   7 PAPIITWTADeAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Canine respiratory ...
QAY30025   7 PAPIFTWTTDeAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Canine respiratory ...
BAS18859   7 PAPGYTWTADeAIKFLKEWNFSLGIILLFITVILQFGYTSRSMLVYVVKMIILWLMWPLTIILTIfNCVYALNNvYLGFS 86  Equine coronavirus
Q01455    87 IVFTIVAIIMWIVYFVNSIRLFIRTGSFWSFNPETNNLMCIDMKGTMYVRPIIEDYHTLTVTIIRGHLYIQGIKLGTGYS 166 Human coronavirus OC43
AAY33957  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Bovine coronavirus
P69599    87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Bovine coronavirus ...
AJL33726  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Bovine coronavirus
AZU96329  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPDTNNLMCIDIKGRMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Yak coronavirus
ABG78752  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Canine respiratory ...
ACL13000  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Canine respiratory ...
AQT26503  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGMMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYS 166 Canine respiratory ...
QAY30025  87 IVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRMYVRPIIEDYHTLTVTIIRGHFYMQGIKLGTGYS 166 Canine respiratory ...
BAS18859  87 IVFTIVAIIMWIFYFVNSIRLFIRTGSWWSFNPETNNLMCVDMKGKMYVRPIIEDHHTLTATIIRGHLYFQGVKLGIGYS 166 Equine coronavirus
Q01455   167 WaDLPAYMTVAKVtHLCTYKRGFLDRISDTSGFAVYVKSKVGNYRLPStqkgSGMDTALLR 227 Human coronavirus OC43
AAY33957 167 LsDLPAYVTVAKVsHLLTYKRGFLDKIGDTSGFAVYVKSKVGNYRLPStqkgSGLDTALLR 227 Bovine coronavirus
P69599   167 LsDLPAYVTVAKVsHLLTYKRGFLDKIGDTSGFAVYVKSKVGNYRLPStqkgSGMDTALLR 227 Bovine coronavirus (strain LSU-94LSS-051)
AJL33726 167 LsDLPAYVTVAKVsHLLTYKRGFLDKIGATSGFAVYVKSKVGNYRLPStqkgSGLDTALLR 227 Bovine coronavirus
AZU96329 167 LsDLPAYVTVATVsHLHTYKRGFLDKIGDSSGFAVYVKSKVGNYRLPStqkiSGMDTALLR 227 Yak coronavirus
ABG78752 167 LsDLPAYVTVAKVsHLLTYKRGFLDRIGDTSGFAVYVKSKVGNYRLPStqkgSGMDTALLR 227 Canine respiratory coronavirus
ACL13000 167 LsDLPAYVTVAKVsHLLTYKRGFLDRIGDTSGFAIYVKSKVGNYRLPStqkgSGMDTALLR 227 Canine respiratory coronavirus
AQT26503 167 LsDLPAYVTVAKVsHLLTYKRGFLDKIGDTSGFAVYVKSKVGNYRLPStqkgSGMDTALLR 227 Canine respiratory coronavirus
QAY30025 167 LsDLPAYVTVAKVsHLLTYKRGFLDRIGDTSGFAVYVKSKVGNYRLPStqkgSGMDTALLR 227 Canine respiratory coronavirus
BAS18859 167 LsDLPVYVTVAKVsHLCTYKRGFLDKIGDNSGFAVYVKSKVGNYRLPStqkgSGMDTALLR 227 Equine coronavirus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap