1F2L,1B2T


Conserved Protein Domain Family
Chemokine_CX3C

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cd00274: Chemokine_CX3C 
Click on image for an interactive view with Cn3D
Chemokine_CX3C: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteines; differ structurally from the other subgroups in that they are attached to a membrane-spanning domain via a mucin-like stalk and can be proteolytically cleaved to a freely diffusible form; chemotatic for T cells, monocytes, and natural killer cells; function as monomers and are found only in vertebrates and a few viruses; currently only fractalkine (sometimes called neurotactin) has been identified as a member of this subfamily; the primary source of fractalkine is neurons, and they exhibit cell adhesion and chemoattractive properties in the central nervous system. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CXC (cd00273), Chemokine_CC (cd00272), and Chemokine_C (cd00271) for the additional chemokine subgroups.
Statistics
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PSSM-Id: 238172
Aligned: 6 rows
Threshold Bit Score: 143.284
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimer type in which the interaction of the N-termini results in a short antiparallel sheet between the 2 subunits
  • Comment:there is some uncertainty whether the biologically active form is a monomer or dimer
  • Comment:differs from other studies in which 1B2T_A (CDF) was shown to be a monomer
  • Citation:PMID 9931005
  • Structure:1F2L_A/D homodimer and B/C homodimer; chemokine domain of fractalkine forms a dimer of dimers
  • Comment:slightly different contacts are made for each of the 2 dimers

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #######           ###                 ###                            
1F2L_A      1 QHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRDG 76  human
1B2T_A      2 QHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG 77  human
P78423     25 QHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG 100 human
O55145     25 QHLGMTKCNITCHKMTSPIPVTLLIHYQLNQESCGKRAIILETRQHRHFCADPKEKWVQDAMKHLDHQTAALTRNG 100 Norway rat
AAB66331   25 QHLGMTKCEIMCDKMTSRIPVALLIRYQLNQESCGKRAIVLETTQHRRFCADPKEKWVQDAMKHLDHQAAALTKNG 100 house mouse
AAO52731   25 QHHGVTKCNITCSKMTSKIPVALLIHYQQNQESCGKRAIVLETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG 100 pig-tailed macaque

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