1JDB


Conserved Protein Domain Family
CPSaseIIsmall

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TIGR01368: CPSaseIIsmall 
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carbamoyl-phosphate synthase, small subunit
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]
Statistics
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PSSM-Id: 273580
Aligned: 22 rows
Threshold Bit Score: 475.963
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1JDB_C          5 ALLVLEDGTQFHGRAIG-ATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADE------------E 71   Escherichia coli
BAA21088        8 ASLVLHGGECFEGYSFG-YEESVAGEVVFATGMVGYPEAMTDPSYQGQILVLTSPMIGNYGIPPIETdhfgl---tkyfE 83   Trypanosoma c...
CAA91004        3 RYLVLEDGTIYPGTGFG-ATTATVGELVFNTGMSGYQESITDQSYNGEILMFTYPLIGNYGINRDDH------------E 69   Lactobacillus...
P07258          8 ATFCIQNGPSFEGISFG-ANKSVAGETVFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVPSGEArdeyn--llkyfE 84   Saccharomyces...
P36838          3 GYLVLEDGTSFSG-ELD-GHENCTGEAVFFTGMTGYQEVLTDPSYKGQIIVFTYPLIGNYGINEKDF------------E 68   Bacillus subt...
CAA68238        3 KYLTLADGTQWIGTAIGdCQLEVAGRIVFNTGMTGYQETLTDPSYLNQMIAFTYPLIGNYGIDPTVA------------Q 70   Lactobacillus...
P31327         46 AHIVLEDGTKMKGYSFG-HPSSVAGEVVFNTGLGGYPEAITDPAYKGQILTMANPIIGNGGAPDTTAldelg--lskylE 122  human
P07259         22 VTLELKDGTVLQGYSFG-AEKSVAGELVFQTGMVGYPESVTDPSYEGQILVITYPLVGNYGVPDMHLrdelveelpryfE 100  Saccharomyces...
WP_013913665    3 GIIYLEDGTVFYGTGFG-KEGNEFGEIVFNTSMTGYQEILTDPSYAGQIINMTYPLIGNYGVNESVN------------Q 69   Clostridium a...
WP_010899043    3 AYLVLATGETFAGEIAN-AKEDVYGEVVFFTGMTGYQEVLSDPSFKGQLVVFTYPLIGNYGINASDF------------E 69   Bacillus halo...
1JDB_C         72 SSq--VHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALaLEKAR- 148  Escherichia coli
BAA21088       84 SMggeIHVSAVVVSEYCDEPAHWQMWETLGQWLRRNNIPGIMMVDTRHIVLKLREMGTALGKVVVND----KD-VPf--- 155  Trypanosoma c...
CAA91004       70 SIk--PTCKGVVVHEVARRASNWRNAQSLDDYLKQNAIPGIMDIDTRAVTKHIRTKGAMKATIVDNVLPDTVD-RLKIT- 145  Lactobacillus...
P07258         85 SPh--IHVVGIVVAEYAYQYSHWTAVESLAQWCQREGVAAITGVDTRELVQYLREQGSSLGRITLAD---HDP-VPy--- 155  Saccharomyces...
P36838         69 SKk--PQVKAAVVYEACDHFSHYEAVYSLKEYLQKWNIPLLTHVDTRAVVKKIRANGTMGATVTASKE------GAEIA- 139  Bacillus subt...
CAA68238       71 APt--IGAQAIIVHELTTFNDHYTSRQSLASFLTIHHVAGIEGVDTRDLTIHIRQTGAQMAILSNHPITD-FE-AQLAT- 145  Lactobacillus...
P31327        123 SNg--IKVSGLLVLDYSKDYNHWLATKSLGQWLQEEKVPAIYGVDTRMLTKIIRDKGTMLGKIEFEG----QP-VDf--- 192  human
P07259        101 SNr--IHIAGLVISHYTDEYSHYLAKSSLGKWLQNEGIPAVYGVDTRSLTKHLRDAGSMLGRLSLEKSGSDRT-ISRSSs 177  Saccharomyces...
WP_013913665   70 SKc--VYAKGFIVKNIDENPSNYTSEINIDQMLKNMGVVGVFGVDTRSITKKIRSYGTMKCIISNGELSIEEL-KKMMD- 145  Clostridium a...
WP_010899043   70 SKe--PQAAGLIVSEQSEEGHHYEATQSLQQFCDQHQLPLLTGIDTRAVVKRIREQGDMPAVITTDLSRVSFE--EWVP- 144  Bacillus halo...
1JDB_C        149 ----------AFPGLNgmDLAKEVTTAEAYSWTqgswtltgglpqakkEDELPf-HVVAYDFGAKRNILRMLVDRGCRLT 217  Escherichia coli
BAA21088      156 ----------FDPNVR--HLVAEVSTKTRSTYGh-----------------Gt-lVILVIDMGVKLNSLRCLLKYDVTLI 205  Trypanosoma c...
CAA91004      146 ----------ELNRA----VVAQSSTNNAYPNPa---------------TGPN---VVVVDFGLKHSILRELAKRQCNLT 193  Lactobacillus...
P07258        156 ----------VNPMKT--NLVAQVTTKKPFHVSalp-------------gkAk-aNVALIDCGVKENIIRCLVKRGANVT 209  Saccharomyces...
P36838        140 ----------LQPEN----VAEQASAQEISTFGd---------------GNKH---IALIDFGYKKSIASSLVKRGCKVT 187  Bacillus subt...
CAA68238      146 ----------FAPQV----LTATPLPVATTTIR------------------PR---VAILNFGEKAAITAELQARGADVV 190  Lactobacillus...
P31327        193 ----------VDPNKQ--NLIAEVSTKDVKVYGk-----------------GNptKVVAVDCGIKNNVIRLLVKRGAEVH 243  human
P07259        178 wrsafdvpewVDPNVQ--NLVSKVSINEPKLYVppadnk---hielqtGPDGKvlRILAIDVGMKYNQIRCFIKRGVELK 252  Saccharomyces...
WP_013913665  146 ----------ASNIVD--DYVNTVSTKEIIHIA-----------------GNGn-KVAVMDFGIKNDIIENLKERQCDIT 195  Clostridium a...
WP_010899043  145 ----------LSERA----LVDEVSTKKVETF-----------------EGNGp-HIVLIDYGFKQSILNSLLKRDCQVT 192  Bacillus halo...
1JDB_C        218 IVPAQTSAEdvLKMNpDGIFLSNGPGDPAPCDYAITAIQKFLEt----DIPVFGICLGHQLLALASGAKTVKMKFGHHGG 293  Escherichia coli
BAA21088      206 VVPHDWDIT--KETY-DGLFISNGPGNPQMCTKTIEHVRWAITq----DKPIFGICMGNQILALAAGGSTYKMKYGHRGQ 278  Trypanosoma c...
CAA91004      194 VLPYNTTASeiMALNpDGVMLTNGPGDPKDVPGALEMIREVEK-----HVPLFGICLGHQLFALANGADTFKMKFGHRGF 268  Lactobacillus...
P07258        210 VFPYDYRIQdvASEF-DGIFLSNGPGNPELCQATISNVRELLNnpvydCIPIFGICLGHQLLALASGASTHKLKYGNRAH 288  Saccharomyces...
P36838        188 VVPYQQ-MEavYNIKpDGIVLSNGPGDPKAIQPYLGKIKSIIS-----RFPTLGICLGHQLIALAFGGNTFKLPFGHRGA 261  Bacillus subt...
CAA68238      191 VLPPTASLKavAAYHpDGILLSNGPGDPTDYHTYLATIRQLAQ-----RYPLAGICLGHQLIALAYGAQTYQLSFGHHGL 265  Lactobacillus...
P31327        244 LVPWNHDFT--KMEY-DGILIAGGPGNPALAEPLIQNVRKILEsd--rKEPLFGISTGNLITGLAAGAKTYKMSMANRGQ 318  human
P07259        253 VVPWNYDFT--KEDY-DGLFISNGPGDPSVLDDLSQRLSNVLEa---kKTPVFGICLGHQLIARAAGASTLKLKFGNRGH 326  Saccharomyces...
WP_013913665  196 IFPYDTDYNeiLNINpDGIFLSNGPGDPKSIPEAIENVKKLIG-----KRPMFGICLGHQIIALASGGNTYKLKYGHRGG 270  Clostridium a...
WP_010899043  193 IVPYDVSFEvvQELNpDGLLFSNGPGDPKQIEDRLPTIYRLAS-----TYPSLGICLGHQLLALAFGADTEKLRFGHRGA 267  Bacillus halo...
1JDB_C        294 NHPVKDVEKNVVMITAQNHGFAVDEATLPaN-LRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIE 372  Escherichia coli
BAA21088      279 NQPSTSRSDGHVFITTQNHGFAVDFKSVSqDeWEECFYNPNDDSNEGLRHRTKPFFSVQFHPEGRCGPQDTEYLFGGVIA 358  Trypanosoma c...
CAA91004      269 NHPVREIATGRIDFTSQNHGYAVDRDSLAqTdLLITHEEINDGTVEGLRHRDYAAFSVQYHPDAAPGPHDADHIFDEFID 348  Lactobacillus...
P07258        289 NIPAMDLTTGQCHITSQNHGYAVDPETLPkDqWKPYFVNLNDKSNEGMIHLQRPIFSTQFHPEAKGGPLDTAILFDKFFD 368  Saccharomyces...
P36838        262 NHPVIDRKTKRVFMTSQNHSYVVDEQSINeEeLTIRFHHVNDTSVEGLAHKKLPVMSVQFHPEAHPGPAESEWIFDDYLK 341  Bacillus subt...
CAA68238      266 NHPVQACADGRIIMTSQNHDYAVDPASIKgTpLIVTHTELNDGSIEGLRLPHQAVMSVQFHPEAHPGPQEAGQFFDDFLL 345  Lactobacillus...
P31327        319 NQPVLNITNKQAFITAQNHGYALDN-TLPaG-WKPLFVNVNDQTNEGIMHESKPFFAVQFHPEVTPGPIDTEYLFDSFFS 396  human
P07259        327 NIPCTSTISGRCYITSQNHGFAVDVDTLTsG-WKPLFVNANDDSNEGIYHSELPYFSVQFHPESTPGPRDTEFLFDVFIQ 405  Saccharomyces...
WP_013913665  271 NHGIYDVQRDKAYITAQNHGYAVDEESVLeNgMIITHRNLNDGTVEGMKHKSIPLFSVQFHPEGAPGPTDTTYLFDQFVK 350  Clostridium a...
WP_010899043  268 NQPVINLKSNRVYMTSQNHSYVVKEDSLQrTdWDATFKNINDGSIEGLTHKYLPIQTVQFHPEAHPGPSDSDEIFHSFID 347  Bacillus halo...
1JDB_C        373 LIEQ 376  Escherichia coli
BAA21088      359 HVKE 362  Trypanosoma cruzi
CAA91004      349 LMAA 352  Lactobacillus plantarum
P07258        369 NIEK 372  Saccharomyces cerevisiae S288c
P36838        342 NVIP 345  Bacillus subtilis subsp. subtilis str. 168
CAA68238      346 TIQK 349  Lactobacillus plantarum subsp. plantarum
P31327        397 LIKK 400  human
P07259        406 AVKE 409  Saccharomyces cerevisiae S288c
WP_013913665  351 LMNE 354  Clostridium acetobutylicum
WP_010899043  348 DVAA 351  Bacillus halodurans
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