Conserved Protein Domain Family
HCV_NS5a_C

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pfam12941: HCV_NS5a_C 
HCV NS5a protein C-terminal region
This is a family of proteins found in the hepatitis C virus. This family contains the C-terminal region of the NS5A protein. CC The molecular function of the non-structural 5a protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the ds RNA dependent (interferon inducible) kinase PKR.
Statistics
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PSSM-Id: 289693
Aligned: 2 rows
Threshold Bit Score: 544.534
Created: 24-Mar-2022
Updated: 13-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P27958 2179 SHITAEAAGRRLARGSPPSMASSSASQLSAPSLKATCTANHDSPDAELIEANLLWRQEMGGNITRVESENKVVILDSFDP 2258 Hepatitis C virus (...
P27958 2179 SHITAEAAGRRLARGSPPSMASSSASQLSAPSLKATCTANHDSPDAELIEANLLWRQEMGGNITRVESENKVVILDSFDP 2258 Hepatitis C virus (...
P27958 2259 LVAEEDEREVSVPAEILRKSRRFAPALPVWARPDYNPLLVETWKKPDYEPPVVHGCPLPPPRSPPVPPPRKKRTVVLTES 2338 Hepatitis C virus (...
P27958 2259 LVAEEDEREVSVPAEILRKSRRFAPALPVWARPDYNPLLVETWKKPDYEPPVVHGCPLPPPRSPPVPPPRKKRTVVLTES 2338 Hepatitis C virus (...
P27958 2339 TLPTALAELATKSFGSSSTSGITGDNTTTSSEPAPSGCPPDSDVESYSSMPPLEGEPGDPDLSDGSWSTVSSGADTEDVV 2418 Hepatitis C virus (...
P27958 2339 TLPTALAELATKSFGSSSTSGITGDNTTTSSEPAPSGCPPDSDVESYSSMPPLEGEPGDPDLSDGSWSTVSSGADTEDVV 2418 Hepatitis C virus (...
P27958 2419 CC 2420 Hepatitis C virus (isolate H77)
P27958 2419 CC 2420 Hepatitis C virus (isolate H77)
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