Conserved Protein Domain Family
YgdL_like

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cd00755: YgdL_like 
Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Statistics
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PSSM-Id: 238384
Aligned: 28 rows
Threshold Bit Score: 204.761
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative ATP
Feature 1:putative substrate interface [chemical binding site]
Evidence:
  • Comment:binding site is based on homology to other members of the superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #                                                          
NP_593202   116 FGEDGMERLRNSFVIVVGCGGVGSWVINMLARSGVQKIRIVDFDQVSLSSLNRHSiatlqdVGTPKTLAIKKAIKKFAP- 194 fission yeast
NP_969180    22 VGDEVMKRLFNTHVMVIGLGGVGSWAAESLARSGVGKLTIIDFDEICITNANRQLhalqglVGKKKAEVMGERLRKINP- 100 Bdellovibrio bac...
ZP_00045574  13 IHQEGMDKLAQLHVLVCGLGGVGSYAAEALCRAGVGHLTLVEHDTIAASNINRQLhathatVGQKKMQVMLQRMQQINP- 91  Magnetococcus sp...
NP_859867    26 IFGENFERIQNTKVVVFGVGGVGGFVVDCLYRSGLQNITIVDKDCFDITNQNRQIgs--ehIDEPKVEVFARLYQGITPi 103 Helicobacter hep...
NP_198569    83 FGLESQHKVTGSYVVVIGLGGVGSHAASMLLRSGVGKLLLVDFDQVSLSSLNRHAvatradVGIPKAMCLKKHFSSIFP- 161 thale cress
P38756       64 LGEEGMRKIKEQYIVIVGAGEVGSWVCTMLIRSGCQKIMIIDPENISIDSLNTHCcavlsdIGKPKVQCLKEHLSKIAP- 142 baker's yeast
NP_905808    22 IGTEAADKLRHSHILIVGTGGVGGYAAEMLCRAGVGRLTLVDADVVNPSNINRQIialhstVGRSKVEVLADRLQDINP- 100 Porphyromonas gi...
NP_812550    14 LGEEKMKRIRASHVLVVGLGGVGAYAAEMLCRAGVGRMTIVDADTVQPANMNRQLpamhstLGMPKAEVLAARYKDINP- 92  Bacteroides thet...
NP_907804    13 LFGEGFEKIQRSKVVIFGVGGVGSFVLDSLYRTGVGEITIIDCDEFDVTNQNRQIgs--eaLGEKKVEALARRYEGVTPi 90  Wolinella succin...
NP_207548     1 MFKNDFEKIRQQRVLICGVGGVGGFALDALYRVGIGQITIIDKDVFDVTNQNRQIgs--erIGESKVLVLQDLYKGIQAl 78  Helicobacter pyl...
Feature 1                                              #                  ##     #              
NP_593202   195 WIEVDARnalfnpdsadDLLSgn---pDFVIDAIDNIQTKVDLLSYCynh-klPVIASTGSACkSDPTRVNIADISATSE 270 fission yeast
NP_969180   101 QNTVTVIpefynaenseMMLShk---pDYIVDAIDNLTAKTHLLATCrer-giKVITSGGSAAkMDPLRIKKADLADTYV 176 Bdellovibrio bac...
ZP_00045574  92 HGQIDPLdqfltreqipDLLEta--kpHVVLDAIDSLNCKVGLIVESyhr-giPVFSSMGAGGrLDPTKVQVSDLMQSHT 168 Magnetococcus sp...
NP_859867   104 QERVDAAfle-----rfDIMEf-----DYIVDAIDEIIAKVEIAKIAsnkpygKYIIATGSAKrVNPLFIRVNNVWKSHG 173 Helicobacter hep...
NP_198569   162 ECHIEAKvmlydssseeEILSgk---pDFVLDCIDNIDTKVGLLAACvkr-glKVLSATGAGArADPTRIRVADIRESTI 237 thale cress
P38756      143 WSEIKARakawtkenshDLIFadgespTFIVDCLDNLESKVDLLEYAhhn-kiDVISSMGVATkSDPTRVSINDISMTEF 221 baker's yeast
NP_905808   101 RVKVYPVaaflkdeameELLDaa--kyDFVVDAIDSLSPKVFLIALSkrr-glPVISSMGAGAkRDASLIDVADIARSYN 177 Porphyromonas gi...
NP_812550    93 DIELTVLpvylkdenipELLDsa--kfDFIVDAIDTISPKCFLIYEAmkr-hiKIVSSMGAGAkSDITQICFADLWDTYH 169 Bacteroides thet...
NP_907804    91 VANVDEAfle-----gfSLEEf-----DVVVDAIDDIPAKVALAKRAh----tKLLSSTGSAKkLNPLHIKVDSIWKSYG 156 Wolinella succin...
NP_207548    79 NLHIDEAfl-------nSFNFrd---yDYILDCMDDLPIKTSLAIKCqnfaygKFISSMGSAKrLNPKHIQVGSVWESYG 148 Helicobacter pyl...
Feature 1                                                                                       
NP_593202   271 DPLSRATRRRLRLLgim----egIPVVFSTEKPdprkasllplseeefe-kgdvdelsalpefrarILPVIGPMPGIFGL 345 fission yeast
NP_969180   177 DPMAAQVRKMLRQKydfpeknfgIPCIFSDETPiqpvelkydngqgfkcvcpkgqndlhscdsrnvIWGTASYVTGAFGL 256 Bdellovibrio bac...
ZP_00045574 169 CPLASKVRQRCRREgvr----ngVICAWSSEIPapplppep-----------------vtqgrpraVNGTISYLPALFGL 227 Magnetococcus sp...
NP_859867   174 DKFARKLRTHLRKAniq----kaIKVIFSSEGAkc------------------------------cPLGSFSGVTASFGL 219 Helicobacter hep...
NP_198569   238 DPLSRSVRHRLRRKhgi---eggIPVVFSLEKPkakllpfegtngede----npldyqvvpgfrvrIIPVLGTIPAIFGQ 310 thale cress
P38756      222 DPISRCVRRKLRKRgia----tgISVVFSNEMLdprrddilspidce------hrainavrdealrHLPELGTMPGIFGL 291 baker's yeast
NP_905808   178 CTLARAVRKRLRKLgis----rgVPVVFSSELPdessvmei-----------------egerckrsTAGTISYMPAIFGC 236 Porphyromonas gi...
NP_812550   170 CGLSKAVRKRLQKMgvk----rkLPVVFSTEQAdpkavllt-----------------ddernkksTCGTVSYMPAVFGC 228 Bacteroides thet...
NP_907804   157 DKFARKFREALKKEgfe----ddFLVVFSPEPPqc------------------------------kGLGSFSAVTGSFGL 202 Wolinella succin...
NP_207548   149 DKFGRKFRDFLKKRrfk----gdFKVVFSPEIPhc------------------------------iELGSFNAVTASFGL 194 Helicobacter pyl...
Feature 1              
NP_593202   346 TIATYVL 352 fission yeast
NP_969180   257 AMASHIV 263 Bdellovibrio bacteriovorus HD100
ZP_00045574 228 LLAGRMI 234 Magnetococcus sp. MC-1
NP_859867   220 IIASEII 226 Helicobacter hepaticus ATCC 51449
NP_198569   311 IMASYVI 317 thale cress
P38756      292 SIATWIL 298 baker's yeast
NP_905808   237 RIAAYVI 243 Porphyromonas gingivalis W83
NP_812550   229 YLAEYVI 235 Bacteroides thetaiotaomicron VPI-5482
NP_907804   203 QLASEAI 209 Wolinella succinogenes DSM 1740
NP_207548   195 QIASEVV 201 Helicobacter pylori 26695

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