Conserved Protein Domain Family
NMD3

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COG1499: NMD3 
NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 441108
Aligned: 74 rows
Threshold Bit Score: 234.405
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011250248   5 FCYRCGISEREggpLIEG-LCQVCYRKENPVLLIENEINTELCQNCGSYKKRGVWVDPHS--YEL----EELIFEVAENA 77 
BAA79725       4 VCPSCGRTLEGs--GVRR-LCPDCYVERYGVARIPEAVKFVYCRDCGAYRYQGGWNEGLE--SVEdt-lREYLHMVLTVR 77 
WP_011822225   3 MCIRCGRDVAV---LVDGrLCPDCYLELYGLGRLPQKLVVTICPRCGSYRFQGRWYPPPGdg-----giEDVVLLIAQAS 74 
WP_012608752   6 FCVKCGREFKQe-dLINS-LCVNCYLKYHGVFKETPHVELTICPKCGSWYFKGAWHPSLDi--------REVIRRELLAD 75 
WP_013129831   3 FCVRCGKEVSDe-eIVGN-YCVDCYVKHLTPFKDKPRLEVMVCPKCGAWFYKGEWNHPLEe--------NEVLRRIAIWG 72 
WP_013143651   4 YCVRCGRKVPEnepLIDG-YCIDCYLKYRGIFVTKPVLNITICPRCGSWMYRGEWRDPLPf--------RDIIRRILISE 74 
WP_083818609  10 rCVRCGREAR----LVDGrLCLECYLEVEGLGRFPKRIDITVCSRCGAYRFEGRWYPPPIdaVDIedviREVLKLTLSAA 85 
WP_020449726   2 FCVKCGKEGK----TYDS-LCSECYLKSNKFTNCPEVSDLVYCAHCKDFQIGKGWVHYDSe--------EEAVKEFAIGN 68 
WP_082007293  22 FCVKCGKETEN---IIDG-LCTECFLDGKKLISLPHHVNVFVCTNCGDTGTGEFWETKDL---------RDAILDAAEGA 88 
WP_055408701   3 MCIRCGREVDK---LVDGrLCSKCYLELYGFGRPPAKLQLAVCTRCGSYRYQGRWFPPPGdg-----glEDVAALVFQAS 74 
WP_011250248  78 LlealedSF-SDKIREYEV---VSPEELEeteeipvgraivsfepvdyhieyfPAIITYEVRVKARTHElqrELHDERKK 153
BAA79725      78 M------KP-TEAVEEAWVe-sIELVQAFa----------------------gPGVYTALVTVAGRAGG---QSLVERKI 124
WP_011822225  75 F------KP-AEHVEYYRVe-sVE---VD------------------------YENERAILVVTGKLRGi-qGEHRVTYT 118
WP_012608752  76 Lh----rFL-YENISVIEVdvvSDIYKIN------------------------AGEYGVKAIFTMEVDGr--HVVKVNQV 124
WP_013129831  73 Sk----rFL-REEVEVLDVsvvKSLHKIS------------------------ASEHGVTLNYQLLIKGi--HPVNFELE 121
WP_013143651  75 Ay----rFIdRQHVNLLDAtilSEPYRIN------------------------ESQYAVKALLHVVVEEy--YPLDLEKE 124
WP_083818609  86 F------KP-NQEVESYRVe-sVEYVRDQ------------------------YHGDHALATVVARLRSs-gEEAKLEYR 132
WP_020449726  69 I------ML-RQDAVLDAVe--CSAERLD------------------------EKHYLVKILVYLLYDD---LEVVEDCT 112
WP_082007293  89 L------NI-NKEAKKLDIe--SVSLEQD------------------------PYTFVVEVTAKLDVKG---CPAEDSAT 132
WP_055408701  75 F------KP-TEHTEYYRVe-gVE---ID------------------------YDAEQALVRVAGRLQGm-eHEDTIVYS 118
WP_011250248 154 VTVYVRQTVCPRCQ-KFLGGYFEAILQVRAEDRPLTEEERKAIGKLVEEKVDEIMRKDRMGFIQDTIEKEEGLDFYMGST 232
BAA79725     125 ITVEASQALCPRCTaRSTGRGFEAEVKVRSTAGSLGRDVKTGIARVLR------RSRSIAGFVVKVDENREGLDIYLTDQ 198
WP_011822225 119 VALETKKQLCPACF-QRAAGTPAAIVQIRGYDGRLSEEDRVAVEDMVQ------TMPGVVDAIISVEELREGIDYKMLDA 191
WP_012608752 125 VITKLRYRTCDKCM-RRTTGSHKVLVQVRFEPLENIEGLRHEVMELL-------RDLEIGESIIEVMELREGLDIKFEDI 196
WP_013129831 122 VPVRITYKPCPSCL-ARAGGSHKALVQVRVEGEVDIEELAEEVEELL-------VKAGLSSSVTEVEVVKEGVDVKFEDP 193
WP_013143651 125 IVLNINRKVCPKCL-AYAGKSHRALVQIRSVNGSFSSEEEKIINKAL-------NDPGVAGDIVEIKKNKYGLDIKFLTS 196
WP_083818609 133 VRVDVKKQLCPQCF-KKAGGAIEAILQVRGEGGKLTEEQREAVEALLAR-----LSPSLREYIVDVVEQREGFDLILVDQ 206
WP_020449726 113 TTVRVRRNVCDRCN-KIQGSYFESIVQVRPSARHFSDKEEEEILSRVMKYAEGVSKNNRDAFISKVVEVHGGYDFYASTL 191
WP_082007293 133 TIIRLKNTVCKRCS-RQLGNYYEAILQIRGSKEVP-HKTMKEALRKVENLVDAQSITNRRLFITKAEEVQGGIDIYLSSI 210
WP_055408701 119 VPVVVQKQICPVCF-QRAAGVPTAIVQVRGYNGRLSEDDRIAVEEIIDE-----LGESIESVILSVDELREGIDLKMLDQ 192
WP_011250248 233 SAARKLAQAIKERFGGKISEAYELVGMDRqTSREVYRTSVSVRIPKFQRGDIVTdKRGTVYEVERVDgKGMTLRNLSTGE 312
BAA79725     199 TAARMLAGKLRSEFSAEVKESYKLVGRQP-SGRRKGRLTISVRIPEYRPGELIS-VEGRPHLYLGRSgRGLVTIDLDTGR 276
WP_011822225 192 NLARHLAAKMRSQMAAMVKESHKVVGRRS-DGKRFSRLTLSVRLPFFREGSLVD-YNGSLAIVERIAnGYVHIRRLGTRR 269
WP_012608752 197 VSPRKYVNILVKKYGAKTSESFKSTKYDFqEGKWSGVMTISVRIPVIRENDIVR-YRGKLGIVKQVEnGVIRILILETGE 275
WP_013129831 194 VAARKLSSILSRKYGASTAESFRSTRFDAhEGKWRGVVTLSVRIPPVYKGMVVE-YQGEVGVVEEVSkGLVKIRILETGE 272
WP_013143651 197 VAAKRLSTILNRLTGARIIESFKPVRYNPdKGRWSGITTLSVRLPSIKKGDLVE-FEGRPGVVIDVSpHGIKTEFLDDGR 275
WP_083818609 207 GAAKAIASKIRSVLGAKVVESWKLVGRRS-DGRPKKRLTLSVRLPFFTKGTIVE-FNGKLYHVEGIKaGFVYIRMVGSRR 284
WP_020449726 192 AFGKMIARDLISTYGAETKESSSIQGQK--DGRNIYRVTYLVRLPPYRVRDIIE-IKGKLYIVSSTGpQTAKLRNIKNHE 268
WP_082007293 211 SMGKAASKELTDTYCAETKEASKLVGLTE-EGTEMYRVTYLVRLPDFQAGDIVQ-FEGRYFKLVRLSsTGAKVIDITNHR 288
WP_055408701 193 NAARSLAARLRSRLAARVKESHKVVGRRN-DGRRVSRLTLSVRLPFFKPGTLVE-YQGSLARVEEIDrGYVLVRQLGSSR 270
WP_011250248 313 SEHKDWKT---LSREGVDTVeheeSE-AMVTSIGR-DEVQLm-dMESYETYEIEKPG-----VELTEGDVYRVVSVKGKR 381
BAA79725     277 ERVVDTSRtgvLAGVKRYEPgarlRR-MMLLSSSGdSMVFLdvdKGMQEVVDAPRGSvrpfvESMEPGRVYEVFIHGGRI 355
WP_011822225 270 QHRLTVEE---AWKKLKKPDie-ehP-VIVAAVEL-GWIHIqylDGAYNYEELPRSRvk-ieGRIEIGGEARLLQYNNTY 342
WP_012608752 276 EVEARLSEy-wDRVLEKPGGiyidERvFTVIAIDK-STIYLl-nEETGELGEASLTPa---nYGLKPGDKVIILSDGERE 349
WP_013129831 273 HVQTKVSGy-wSGIIKPLPKaylgGK-YVVTSVDK-NYVYLl-nEDTGELREVSIKPg---ySHLKTGDKVLLLSIEDKE 345
WP_013143651 276 IENIRFEKy-wRGDLKKAEDlvysET-YSVIAEDK-TTIYLl-dEETGNIIDYPRTKt---lANISVGDKVRAVRVRDKV 348
WP_083818609 285 VHRLTVED---AWKLLRRPRfeeeKR-VLVAAETP-SSIHLqalEGSYEYLELPRRSvsfdpGVVQQGREVLLVRHNGRY 359
WP_020449726 269 PKTVSNVD---LREVRVVGTkddfMD-AVVLTETD-REFQIm-hPSSYKTVEIKKPRgf-----krTGDTIKIFSYEGEL 337
WP_082007293 289 ERSVKRSD---IPMLKVFVKagdlRE-AVVISKGK-GEVQIl-ePSNYSTVDLKIP------EDAEIGDAVKVVEINDSL 356
WP_055408701 271 LHRLTVEE---AWRQLHEPRlddhRR-VLVVALEP-GWIHLqylDGSYEYLEIPRRDts-ieGKLKEGVEAELLVYNNRY 344
WP_011250248 382 YIRGRKE 388
BAA79725     356 YVLRETG 362
WP_011822225 343 YLLPKTK 349
WP_012608752 350 LVVKKEG 356
WP_013129831 346 YLIKESE 352
WP_013143651 349 YMIKNSE 355
WP_083818609 360 YVLPLLG 366
WP_020449726 338 YFIGN-- 342
WP_082007293 357 YYVP--- 360
WP_055408701 345 YLLPRY- 350
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