Conserved Protein Domain Family
CCL1

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COG5333: CCL1 
Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 227640
Aligned: 9 rows
Threshold Bit Score: 221.915
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
584903    71 DTNARAIAYIEENL-LKFREAHNLTEEEIKVLEAkaIp-LTMEEELDLVNFYAKKVQVIAQHLNLPTEVVATAISFFRRF 148 baker's yeast
19173305   1 -----------------------------------------MKSSAGRTMKYRKEIMDTCMKLNLPLTVRSTSIQIFDKT 39  Encephalitozoon cun...
19113957   1 MADSLVHSLASSSQlEAFDSFEYAEELCTLGSEWiqEagVLLNLTQNCVIVCLILFRRYCTLYPPRVPDLDAIVMACVSI 80  fission yeast
19112745   1 ---------MAANYwASSQLTQLFLSTDLESLEP--------TCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRY 63  fission yeast
12643631   1 -----MSEVIKSVPpGSQNTSQWIISKDQLVFTPsaLdgIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRF 75  fission yeast
19112118   1 --MAENENHVLSIRmSHPYYSEKEISRILSTRDP---------KENNLRMQAFAWISTLSKTLKFPVRTSGLAMLLYSRF 69  fission yeast
543985    28 KVNEKFTNIVRERM-LEELSLQNK-EASLEVLPP--T--LTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRF 101 fission yeast
1169121    1 MPSTFESQLFFSRPfLSKRQIQRAQKNTISDYRN--------YNQKKLAVF--KFLSDLCVQLKFPRKTLETAVYFYQRY 70  baker's yeast
1351368   27 KLWLLECQLFPQGLnIVMDSKQNGIEQSITKNIPitHrdLHYDKDYNLRIYCYFLIMKLGRRLNIRQYALATAHIYLSRF 106 baker's yeast
584903   149 FLENS-VMQIDPKSIVHTTIFLACKSEN-----YFISVDSFAQ--------------KAKSTRDSVLKFEFKLLESLKFS 208 baker's yeast
19173305  40 VGKMF-QEEKEMRSVVYAIVILASKCEE-----IHGNIESLVKr-------------LPESDRESIFSYESEMFEALDYN 100 Encephalitozoon cun...
19113957  81 GSKTT-ETPASVQDICNVVVYLKERFKD-----TNFEARGFIAhdl--------yseEMYSSRNRLSNMELEVLRALNFD 146 fission yeast
19112745  64 MLKKNeEKGFSLEALVATCIYLSCKVEEc---pVHIRTICNEAndl--------wslKVKLSRSNISEIEFEIISVLDAF 132 fission yeast
12643631  76 YLRFS-LKNYHYYEVAATCIFLATKVEDsvrklRDIVINCAKVaqknsnvlvdeqtkEYWRWRDVILYTEEVLLEALCFD 154 fission yeast
19112118  70 QLFFP-VNEIPLLECATACLVVASKIEDtakkfRDILLAHYLQkhp--------gseVDAHSQKRILGLERMTLELICFD 140 fission yeast
543985   102 YLINS-VMEYSPKIISFTSLFLATKCND-----HYISIEQFCKn-------------MPKTTPEEVLEYEFNVCQSLKWD 162 fission yeast
1169121   71 HLFNR-FETEVCYTVATSCLTLGCKEVEtikktNDICTLSLRLrnvvk-----intdILENFKKRVFQIELRILESCSFD 144 baker's yeast
1351368  107 LIKAS-VREINLYMLVTTCVYLACKVEEc---pQYIRTLVSEArtl--------wpeFIPPDPTKVTEFEFYLLEELESY 174 baker's yeast
584903   209 LLNHHPYKPLHGFFLDIQNVLYgkvdlnymGQIYDRCKKRITAALLTDVVYFYTPPQITLATLLIEDEA---------LV 279 baker's yeast
19173305 101 FHFPSLYLRMYGVLAMLQEKGLi------mAEKGTMEEKISKDDGDEIFIYNGKECIVPSIDRLWTCSV---------QN 165 Encephalitozoon cun...
19113957 147 THIVIPHKLAIHYLQTLQLIDN--------KKLLQITWNFLNDASRTRLCVLYPPFSLACGCIAMAARV---------IG 209 fission yeast
19112745 133 LIVHHPYTSLEQAFHDGIINQK----------QLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCN---------DE 193 fission yeast
12643631 155 FTVEHPYPYVLSFIKKFVADDK---------NVTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFALEKneinlstttDG 225 fission yeast
19112118 141 FRVRHPHNYMVKFAKSLKFSSS----------TASIAWNVCTDAYKTYTMLKYPAHIVAVASISIACKLq-------qLP 203 fission yeast
543985   163 LYVWLPFRPLQGFLLDCQTVLPkvav-ekfYECHDLSKKFLIETLHSDIYFLHSPSIIALGAIYHTNPT---------IC 232 fission yeast
1169121  145 YRVNNYVHIDEYVIKIGRELSFd-------YKLCNLAWVIAYDALKLETILVIPQHSIALAILKIAYEL---------LD 208 baker's yeast
1351368  175 LIVHHPYQSLK--QIVQVLKQPpfqi-tlsSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISI---------HG 242 baker's yeast
584903   280 TRYLET-KFPSREGSQESVPGNekeEPqndasTTEKNKEKSTESEEYSIDSAKLLTIIREcKSIIEDCKPPSTEEAKKIA 358 baker's yeast
19173305 166 MDKILLlDKESYKEIELVYASL-----------HFPCEIFGSLTFPFNRDNVVELRNVCEnPQFSK-------------- 220 Encephalitozoon cun...
19113957 210 MKLPKDwYRVFDTTKEEIDSLT----------SILENFYKTSAIAHKTLYLIFTEQVSA--------------------- 258 fission yeast
19112745 194 NTIPKLlDLIKSTDAFKVILCV-----------QRIISIYYFEDIE---------------------------------- 228 fission yeast
12643631 226 LPVWMEeSQVSYEDVKGVLTLIdslYKki-npSKQALPIDQKNGSHASSVAPGTPSSLASvSTQATPQHQNSSGRTDSFH 304 fission yeast
19112118 204 QPIIPRsFFAPPALTEAVIADIldlYMhyqphTCIGNMYTTEKLLGLCVDFQRAQKNSGR-PQKPPQIDPHSSSLADEYR 282 fission yeast
543985   233 LQYIEAkKIPELQPLIISISAN---LK-----ATKKFKIEKKKAQDYGRKLYFCMNPLRN-KSSALYLKRKAEEESTNNN 303 fission yeast
1169121  209 NKNWSSkRYSLFETDEKSVNEAy--------fDIVNFYINSFDMCDLQRHLPADLLPIGVeRFMELKKNAGPESGLPQIP 280 baker's yeast
1351368  243 KPTKGS-SLASAASEAIRDPKN---SS-----SPVQIAFNRFMAESL-VDLEEVMDTIQE-QITLYDHWDKYHEQWIKFL 311 baker's yeast
584903   359 AKNYYCQNPSTLIQKLKRK 377 baker's yeast
19173305     -------------------     Encephalitozoon cuniculi
19113957     -------------------     fission yeast
19112745     -------------------     fission yeast
12643631 305 SLNTETPSKSTVDDQILST 323 fission yeast
19112118 283 ESNKRLQESKESCARFILD 301 fission yeast
543985   304 KWAKKFSTSSNVLDKNPFE 322 fission yeast
1169121  281 DHLLNADPYITITRDNNVQ 299 baker's yeast
1351368  312 LHTLYLRPASAI------- 323 baker's yeast
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