Conserved Protein Domain Family
RVT_2
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pfam07727: RVT_2 
Reverse transcriptase (RNA-dependent DNA polymerase)
A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. This Pfam entry includes reverse transcriptases not recognized by the pfam00078 model.
Links
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Statistics
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PSSM-Id: 400190
Aligned: 3 rows
Threshold Bit Score: 415.837
Created: 20-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q2R072        916 KTWRLVDLPSGHRPIGLKWVYKLKKDAQgVVVKHKARLVAKGYVQRAGIDFD--EVFAPVARLDSVRLLLALAAQEGWMV 993  Japanese rice
CAR65566     1170 EVYTVVKNPKNVKPIPTTWVHTHKINDL-KEVQYKSRCVVQGFRQIANEHYDtsKVSSPVIELSIIRLLTAIAVEYEWPI 1248 Debaryomyces ...
XP_002770268 1022 NTWDLVSLPKDRKAIGNRWVFTKKD-----DGRYKARLVAQGFSQVPGEDYL--DTFSPVIRYESVKLLLAFSAVDNRVV 1094 Debaryomyces ...

Q2R072        994 HHMDVKSAFLNGELIEE--VYVVQPPGFEIDgqENKVYRLDKALYGLRQAPRAWNTKLDCTLKKLGFKQSPLEHGLYARG 1071 Japanese rice
CAR65566     1249 HHLDISSAYLHADIDYEksIFVKPPPGSNID--SGKCWQLNKSVYGMKQAGYMWYQCITKVLMDLNFEPDTAISGMFCKY 1326 Debaryomyces ...
XP_002770268 1095 HQMDVDTAFLNGTVEET--LYMKQPVGFINEnePEKVCKLNKSLYGLKQAPICWNTTISDFLAEHRFNRIDTELGIYVRG 1172 Debaryomyces ...

Q2R072       1072 DGSGR-LLVGVYVDDLVIVGGDSGMIKGFKEQMKAEFKMSDLGPLSFYLGIEVHQEAGIITLKQAAYASRIVEKAGLTGC 1150 Japanese rice
CAR65566     1327 FGENKkLIVALYVDDMFLTSSNITILNDFKLELAKHFDLKYFADISEFLGIEFIQIAGGYRLSQHNFLNSVIKKFNLTNN 1406 Debaryomyces ...
XP_002770268 1173 ----N-IIIGLYVDDILISGKDMKEIEDVKKMLASKFKMKDLGVAKKFLGINIAQDTNGIKICLYDYIGKVLQDFEMTDA 1247 Debaryomyces ...

Q2R072       1151 NPCATPME 1158 Japanese rice
CAR65566     1407 YGKYIPII 1414 Debaryomyces hansenii CBS767
XP_002770268 1248 NTVTTPTl 1255 Debaryomyces hansenii CBS767
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