Conserved Protein Domain Family
rho

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PRK09376: rho 
transcription termination factor Rho; Provisional
Statistics
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PSSM-Id: 236490
Aligned: 732 rows
Threshold Bit Score: 481.177
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
162147052   1 MHLAEL-KAKTPADLLAYAESLQIENASSLRKQDMMFAI----------------------------------------- 38 
28493403    2 SDGEDI-RNLSLSKLRTLAIQRGIKSAYRYKKSDLLERLaaadksvvdaadspgespitlddlanaipegtperqqtgdi 80 
19703811    1 ---MDIlNKLLLKDLQEIAKVMEIEIGVGQKKDELKRII----------------------------------------- 36 
108804491   2 TELATL-ERKRLSDLHQIASQLGIEHYRKYRKAELAELI----------------------------------------- 39 
269123047   4 ITLDEL-GNFTLTNLRKLAKEHKIEGYSTIPKMELLNRL----------------------------------------- 41 
226356084   8 LPYHEL-QQKILPELHLIAAGYGIENYRKLKKDALALAI----------------------------------------- 45 
257126662   1 -MIKNI-LEQNVTNLKKIAKEYKIEGFSGMSKLELINAI----------------------------------------- 37 
269122387   1 --MENI-FEMKLTELRKKAKEYGITGFSTMGKSDLITNI----------------------------------------- 36 
297624534 130 LNYRDL-QSKILPELHLLAKEVGLSDYRQMGKDELSVAI----------------------------------------- 167
15806355   11 LPFQEL-QEKILPELHLLAAGLGIENYRKLKKDALALAI----------------------------------------- 48 
162147052  39 --------LK---------------------------------------------------------------TL----- 42 
28493403   81 rrvnepdrVS---------------------------------------------------------------ITrerrg 97 
19703811   37 --------SN---------------------------------------------------------------SL----- 40 
108804491  40 --------YKvatqqaaeqqragenpgsagavaeapaanggeeqaapeartqtdafgeadtavverpeevekrRQeqqqr 111
269123047  42 --------CY---------------------------------------------------------------SI----- 45 
226356084  46 --------LE---------------------------------------------------------------HQ----- 49 
257126662  38 --------LI---------------------------------------------------------------EK----- 41 
269122387  37 --------YI---------------------------------------------------------------EE----- 40 
297624534 168 --------LE---------------------------------------------------------------RA----- 171
15806355   49 --------ME---------------------------------------------------------------KQ----- 52 
162147052  43 -ADN----------DQA--------IHGEGTLEILPD-GFGFLRSPEANYLPGP-DDIYISPSQVRRFGLRTGDTVEGQI 101
28493403   98 rSRRrrieegildsSQL--------VPIAGVLDVL-D-SCAFIRT--TGYSPGD-SDIYVSLSQVKKYSLRKGDAVAGEV 164
19703811   41 -EEN----------NTE---------LAYGTLDTAPE-GFGFLKET-----TLG-KNIYMSASQIKRFKLRRGDQVLGEV 93 
108804491 112 qRREqp-------pAEQegrerdesLVQSGVLDVLPD-GFGFLRT--SGYSQSK-NDVYISTSQIKRFNLRRGDYIVGQI 180
269123047  46 -ATA----------EGL--------IYSYGELDIINE-TYGFLRNTPQN------IDVYVSNSQIKKFGLRQGDVIVGEV 99 
226356084  50 -ADA----------EGQ--------ILARGYLEISPD-GYGFLQA---DLLDPQsRSVLVTAGIIKQFHLRTGDQVIGRA 106
257126662  42 -GKE----------NGK--------TYGFGKLDIMSEgTYGFLRKTSIG------PDIYMSVSQIKRFFLRNEDIVFGEL 96 
269122387  41 -AKK----------DNI--------ILGSGRLDMMSD-GYGFLRESSVG------PDIYVSASQARKFALRNEDIVLGEV 94 
297624534 172 -AEAe---------GLK---------LVQGYLEISSD-GYGFLQE---SLLQNNtRSVIVSAGLIKQFKLRTGDFILGKA 228
15806355   53 -ADA----------EGQ--------SLARGYLDITSD-GYGFLQA---DLLDPAsRSVLVTAGVIKQYHLRTGDEVIGRA 109
162147052 102 RA--PRDG--ERYFALLKVNTINFEPPEAVRHRINFDNLTPLYPERRLKMEV---EanavggePekvekgkgaksqpKDF 174
28493403  165 ARvkSIDSykQRHFPLVSVNTVNGLEFQQVTTRPAFESGMCVPPTRRLRITP---K-------T-------------APV 221
19703811   94 RK--PIGE--EKNYAIRRVLKANDNDLAALESRVPYEELIPTYPTEQFVLGI---E-------Q-------------GNI 146
108804491 181 RP--ARNG--EKYPAMVRIETINGREAQKGRWRPNFDDLTPLYPMERLRLEW---K-------P-------------NDI 233
269123047 100 RK--PLND--EKNFGLLKLIYVNGEKGELSRQRPIFDDLTPSYPIERLELGE-------------------------GTV 150
226356084 107 RR--PREN--ERYGSLVRVEAVNGLDPEAARRRPRFDDLTPTFPDAQLVLEDpgtD---------------------DTL 161
257126662  97 RI--PIGT--EKNYGVLKVLLVNGDLPEKSLKRPYFDDLIPSYPDEKLNLGN-------------------------GEI 147
269122387  95 RE--PIGT--EKNYALIKTLLINGDAPEKSTNRPFFDDLTPSYPEEKLNLSS-------------------------ASL 145
297624534 229 RR--PRDN--ERYGTLIRVEAVNGVDPFQAAKRPRFDDLIPTFPERRIRLET---T-------Q-------------NEV 281
15806355  110 RK--PREN--ERYGSLVRVEAVNGLDPEAARQRPRFDDLTPTFPDQQLVLEDps---------------------tdDGL 164
162147052 175 TPRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVR-GEVVSSTFDEPA 253
28493403  222 EKRIVDLVSPVAKGTRGLVRGPSKSGRTTVLHEIAAGLCEQNKELHLITLLVGIRPEEATHMSRTLR-GEVVVSSMECSP 300
19703811  147 SGRILDLISPIGKGQRALIIAPPKAGKTTFISSIANALIEGQKDSEVWILLIDERPEEVTDIKENVEgATVFASTFDDDP 226
108804491 234 APRVIDLVAPIGKGQRGLIVSPPKAGKTTILKQIAQSIAANYPEVRLFVLLADERPEEVTDWERSVReAEVVASTFDQPA 313
269123047 151 SSRIIDLIAPIGKGQRGLIVAPPKAGKTTILSDLANDILKYNKDVQVWIILIDERPEEVTDIKENVKnAEIFAATFDENT 230
226356084 162 SLRVVDLLVPIGRGQRALIVAPPKAGKTTLLKKIANSIVKNYPDVTVMVLLVDERPEEVTDFRESVQgAQVIASTFDEPP 241
257126662 148 SSRIIDLISPIGKGQRGLIVAPPKAGKTVLLSTLANDIIKYNPEIDVWILLIDERPEEVTDIKENVKeAEVYSATFDEDP 227
269122387 146 SSRIIDLIAPIGKGQRGLIVAPPKAGKTILLSTLANDIINNNPEVELWILLIDERPEEVTDIKENVRdAEVFSATFDEDP 225
297624534 282 AARVIDLLAPIGRGQRGLIVAPPKAGKTTLLKKIANSVVQNEPDIKVIVLLVDERPEEVTDFRESVTgVEVIASTFDEPP 361
15806355  165 SLRVVDLLVPIGRGQRALIVAPPKAGKTTLLKKIANSITKNYPDVTVMVLLVDERPEEVTDFRESVQgAQVIASTFDEPP 244
162147052 254 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTII 333
28493403  301 EEQVGVAELVLERSKRLVEQGRDVLLIVDSMTHLGRAYALVGAPPSRLIGSAAELSALRPITSFFLSARCIENSGSITML 380
19703811  227 KNHIKVTEEIIEKAKMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGIDPTALYHPKNFFGAARNIKDGGSLTII 306
108804491 314 ENHIAVAELVLERVKRLVEEGEDVVVLLDSITRLARAYNLAAPASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTIL 393
269123047 231 SVHLSVTEKVLEAAKREIEKGNNIVILMDSLTRLARSYNIEMPSSGKLLSGGIDPKSLYMPKKFLGAARKIRGGGSLTIL 310
226356084 242 QHHVRVAEFVHERARRIVEDGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALHWPKRFLGAARNIREGGSLTIL 321
257126662 228 RMHTQVTENVLEMAKREVERGKDILILMDSLTRLARSYNITIPSSGKLISGGIDPNALYYPKRFLGAARNIKKGGSLTII 307
269122387 226 SVHIKVTEDVLEKAKREVEKGKDIVILMDSLTRLARSYNIVVPSSGKLISGGIDPKALYYPKRFLGAARNIRKGGSLTII 305
297624534 362 TNHIRVAEFVHERSRRIVEEGGHVMILLDSITRLARANNLVTPPTGRTLSGGLDSSALHWPKRFLGAARNIRGGGSLSIM 441
15806355  245 QHHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALHWPKRFLGAARNIREGGSLTIL 324
162147052 334 ATALIDTGSRMDEVIFEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVERSELSKMWVLRRILAPM-GTMDA 412
28493403  381 ATVLSESESAFDRLVEYDLVAVSGMQLVLDKLASERRDFPAINPIRSSSRDEFTLLSASEQSEVKRLRV--RSE-GS--- 454
19703811  307 ATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQLAEFRIFPAIDITKSGTRKEELLLNKNQIDDIWNLRRLLNDYdNKVSA 386
108804491 394 ASALIDTGSRMDEVIYEEFKGTGNMEIHLDRKLANRRIYPAINIEDSGTRKEELLMEPAEAQRVWQVRNILNAL-DTAAK 472
269123047 311 ATALIETGSRMDEVIFEEFKGTGNMELVLDRALQQLRLFPAVDILKSGTRKEELLYSKREFDSILKLRKFLLKL-NEAEA 389
226356084 322 ATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIFPALDILKSGTRREELLLQPEVLKKMWLLRKVISDM-DPADA 400
257126662 308 ATALIETGSRMDEVIFEEFKGTGNMEILLSRTLEQLRIFPAIDVLKSGTRREELLIPRKNLEKIWRLRRELSEM-SEVEG 386
269122387 306 ATALIETGSKMDDIIFEEFKGTGNMEVILERSLAELRIFPAIDVLKSGTRKEEILLDEKTLKTIWNFRRYLSNY-NEAEA 384
297624534 442 ATALVETGSRMDDVIFEEFKGTGNMELHLSRRLEERRIFPAIDILKSSTRREDLLLSEDVLAKMWLLRKVISDM-DPAEA 520
15806355  325 ATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIFPALDILKSGTRREELLLQPEVLKKMWLLRKVISDM-DPADA 403
162147052 413 MDFLLDKLKYSKTNRDFFDAMNT 435
28493403      -----------------------    
19703811  387 TSALIKAIKTTRNNDELLAQLPK 409
108804491 473 IELLIQKLKETRTNAEFLRQLQR 495
269123047 390 LKFLMDLIKRYSSNKDLLENIDY 412
226356084 401 MEMLLSRMGKTRNNVEFLQALAG 423
257126662 387 MKNLIELIKQYKNNDELLDDLYK 409
269122387 385 VKKLIDLIKKTKSNDELINMISK 407
297624534 521 MDMLLSRLSRTKNNAEFLSTLGH 543
15806355  404 MEMLLGRMGKTRNNVEFLAALAG 426
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