2DGY


Conserved Protein Domain Family
S1_eIF1AD_like

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cd05792: S1_eIF1AD_like 
Click on image for an interactive view with Cn3D
S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Statistics
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PSSM-Id: 240218
Aligned: 8 rows
Threshold Bit Score: 147.576
Created: 17-Dec-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:By similarity to eIF1A. This large RNA-binding surface on eIF1A is important for directing the 43S preinitiation complex from the 5' end of the mRNA to the initiation codon, a process referred to as scanning.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ##   #             ####  #    #                                       
2DGY_A        16 QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFW 93  human
AAY66860      25 QQIVRILSGKGNNLHEVEDPSGSTYLVSMPTKFRKNIWVKRGDLVIVEPIEEGDKVKAEIVRILYREQVKYIKEEGKW 102 black-legged tick
XP_784016     25 QQILKILGGRGNNLHEAQTSEGDKFLISMPTRFRKNVWIKRGDFVLADPIAEGDKVKAEIVAILYPKQIKYIKQERLW 102 purple urchin
NP_001001612  25 QRIVRVLGSPGNNLHEVETADGSRFLASMPPRFRHHVWIKRGDFLLVDPIEEGAKVKAEMALVLLRPHVRFLQRQGLW 102 chicken
NP_001040352  26 QNIVKVVKSKGNNLHEITTPTGEEYLVSMPTKFRKNIWVKRGDYILVEPIPEGDKVKAEIVKIMNKDSIKFYKENNVW 103 domestic silkworm
XP_001120246  24 QSIVRIVKSCGNNLHEVIDPAGIQYLISMPVKFRKNIWIKQGDFVLVEPIPEGAKVKAEIVKILTREHKKWYREQNCW 101 honey bee
XP_968962     26 QTIVRIISTKGNNLHEVLAPNQSTYLVSMPTKFRKNIWVKRGSYVLVEPITEGDKVKAEIVRILTNEHIKCLKEDNVW 103 red flour beetle
NP_505624     25 DIIAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWLRRDQFVVVRPITEGDKVKGEIEYILDQDNVLYIRELGKW 102 nematode

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