Conserved Protein Domain Family
ABC_cobalt_CbiO_domain1

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cd03225: ABC_cobalt_CbiO_domain1 
First domain of the ATP-binding cassette component of cobalt transport system
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Statistics
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PSSM-Id: 213192
Aligned: 138 rows
Threshold Bit Score: 131.435
Created: 20-Jan-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              ## ###                                   
P47426       18 AVSHLSCVfnsktnnpikvIDDFSYTFQKnqIYCIIGDSGSGKSTLVNHFng-----lIKPNQGDIWVkdiyigakqrki 92  Mycoplasma genit...
NP_892246    16 TFKNVSFSwpgk---nehvINNCNFSINKtgLWMIVGKNGSGKSTLLKLIng-----lLIPSNGVINKla---------- 77  Prochlorococcus ...
AAQ89671     41 ECRNLCFSvstrqgisvpiLRDCSFRIPSgqLWMILGPNGCGKSTLLKILag-----vVNPSSGTVFVek---------- 105 thale cress
BAD52721     45 EGQGVELSvttrrgrvlpvLKDCSLRVPPgqLWMLLGPNGCGKSTLLKVLag-----fLNPSSGTVYInr---------- 109 Japanese rice
NP_488586     7 VVKDLNFSwpng----etaIQSCSLEVPQgeFWMLLGTNGSGKSTLLRLLag-----lLAPKSGEIGVlh---------- 67  Nostoc sp. PCC 7120
NP_925000     6 EVRGLGFAppgq---erqiLHNVQLTLAPgeIVLVAGPTGSGKSTLINAVagvipahtGGRLEGEVAFagrsllpl---- 78  Gloeobacter viol...
AAN24513     30 ASRGISFTydha---aepaLRDITLTVPAgeCIVLCGASGCGKTSYTRVAnglipsffHGAFAGNQTTcgldvetv---- 102 Bifidobacterium ...
ZP_00120393  30 ASRGISFTydha---aepaLRDITLTVPAgeCIVLCGASGCGKTSYTRVAnglipsffHGAFAGNQTTcgldvetv---- 102 Bifidobacterium ...
NP_972209     5 EARIKNFTyend---esptLHAIDLSIEEgeLVVLTGFSGCGKTTLTRILnglipyhyGGILDGEVRIlgknildy---- 77  Treponema dentic...
YP_084595     8 EINNLSFVyade---neyaLQHISLSIQKgeFITLAGGSGSGKTTLLKHFkke--llpIGTRSGEIFYddvlleev---- 78  Bacillus cereus ZK
Feature 1                     #                                                                 
P47426       93 knfkklrktISIVFQFPEYQLFkdtVEKDIMFGPVALGqskydarqkaayylemmglkypflernpfeLSGGQKRRVAIA 172 Mycoplasma genit...
NP_892246    78 --------nIGMVFQNPDHQILmpnCRSELLLNINQNLsrkdisnkidialn--kvglagfdkrsihtLSGGQKQRLTIA 147 Prochlorococcus ...
AAQ89671    106 --------pKNFVFQNPDHQVVmptVEADVAFGLGKYHdmnqeevksrvikaleavgmrdymqrpiqtLSGGQKQRIAIA 177 thale cress
BAD52721    110 --------pCSYVFQNPDHQVVmptVESDVAFGLGKLNlsldevrsrvsqsld-avgmlsysqrpiqtLSGGQKQRVAIA 180 Japanese rice
NP_488586    68 --------pVGFVFQNPDHQLVmptVGADVAFGLVEEKlptsavrarvdealg-avnlsalqlrpiyaLSGGQKQRVAIA 138 Nostoc sp. PCC 7120
NP_925000    79 -svrerarhIGTVLQNVEVQIFtdrVREEVAFGLENLNvppgriaeqmgella-efglqsqrdwpiarLSAGQKQRLVLA 156 Gloeobacter viol...
AAN24513    103 -pidrltplVGSVFQNPKTQYFnanVTDELAFPAENIGlpaedinrritavae-rfgighllhrsifhLSGGQKQRIAVA 180 Bifidobacterium ...
ZP_00120393 103 -pidrptplVGSVFQNPKTQYFnanVTDELAFPAENIGlpaedinrritavae-rfgighllhrsifhLSGGQKQRIAVA 180 Bifidobacterium ...
NP_972209    78 -kkgelakyIGNVFQNPSDQFFatiAEEEVAFAGENLGmdsqtlcektdaafq-tmqieslkgaklseLSGGQKQKVAIA 155 Treponema dentic...
YP_084595    79 -pdllsaqeIGMVFQNPENQLVmdtVIQELAFSLENIGlpshiiqkriaelis-flgfqdllhqsvhtLSGGQKQLVNLA 156 Bacillus cereus ZK
Feature 1                   ##                                  #                   
P47426      173 GILAIEPEILIFDEPTAGLDPEGEREMMQLIKTAkqq---qrtVFMITHQMENVlevadVVLVLAkGK 237 Mycoplasma genitalium
NP_892246   148 SSLISDKNFILMDEPTALLDSSSQLAVLEIIKGLtknkrnpftALWITHRLEELsy-adAVAEMKnGN 214 Prochlorococcus marinus subs...
AAQ89671    178 GALAEACKVLLLDELTTFLDESDQMGVIKAVKDLinakkgdvtALWVTHRLEELky-adGAVYMEnGR 244 thale cress
BAD52721    181 GALAEASKVLLLDELTTFLDEYDQMGVIKAVRKSvgag-gevsALWVTHRLEELry-adGAIYMEdGQ 246 Japanese rice
NP_488586   139 GAIARRCEVLLLDEPTALLDPDSQLDLVASVRRLvksr--gitALWVTHRLDELny-cdGAFLLEkGC 203 Nostoc sp. PCC 7120
NP_925000   157 CVLAMDQPVLLLDEPFAYLDRAGAQLLLELLVRRara---gqaILLVEHRLDLVaavahRSYCCAdGT 221 Gloeobacter violaceus PCC 7421
AAN24513    181 AATMLGPRLVVLDEPTSNLDANAIADMRAMIEQMkde---gltIVIAEHRLAWLngvadRYVVFDgGH 245 Bifidobacterium longum NCC2705
ZP_00120393 181 AATMLGPRLVVLDEPTSNLDANAIADMRAMIEQMkde---gltIVIAEHRLAWLngvadRYVVFDgGH 245 Bifidobacterium longum DJO10A
NP_972209   156 STLIYDTKLLFFDEPSSNLDYEGIVQFQAMIRDLkam---gktIIIAEHRLFFLnelydKLIYMKdGT 220 Treponema denticola ATCC 35405
YP_084595   157 AVLVMQPKLLLLDEPTAQLDPIAAKEFLGLLKRIneel--gitIVLSEHRLDEViplatRVICMNnGR 222 Bacillus cereus ZK

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