Conserved Protein Domain Family
RnhC

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COG1039: RnhC 
Ribonuclease HIII [Replication, recombination and repair]
Statistics
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PSSM-Id: 440661
Aligned: 73 rows
Threshold Bit Score: 202.783
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011160980   2 MSNY--SFKLNNNQVATIKKFYY-KQ---LKLSPNKTVAFVID------E--SLAKIIVY--NNGTLLVQGKN--TLSIV 63 
WP_083759915  22 LRGRegVRGALSGLPEELRLYLAeHG---VEVVGSRRIDHGTQyrlvrgG--EEATLNVY--DTGRVLEGGRAtgLRELL 94 
WP_048810207   3 SSSY--TFSFDEKQTEKLKEILLqRG---FDISPLNHGLFRAT------T--RGVVIQAY--KTGKILVQGKE--ALEFA 65 
WP_012374917  14 LSSY--TIKLDDAQMEKLRGICEaRG---FTPVEVAYTRFAFK------SdpARINLAAY--TSGKVVVAGKG--TEEFV 78 
WP_012616737   1 MSLF--QASPPDEFYQEIATRLNaAG---IQAGPRRTIAYGFQfqvstsE--WSTLLRVYqkKSGAVTVDYSQv-RNSQA 72 
WP_013044438  17 KTMY--TIKLDDAQMDKLADYLEeGHqgpWFHYDVAYSLFAFK------G--EKVNVVGY--QSGKLVISGKK--TEDFV 82 
WP_009511923  16 ISSY--TIKLDDAQMEILHDICKaRH---WMPFEVAYTRFAYK------AdhLKLNLSAY--TSGKVVIAGKG--TEDFV 80 
WP_046298021  15 LSTY--TIKLDATKRAQLREILKgRG---WDAFEVAYADYAFK------G--ANCNVTAY--TSGKLVVAGKG--TEEFI 77 
WP_069960403  15 ITSY--TIKLDDAQMEKLRAAVAaKH---WESAEVPYARFAFK------G--PKVNVTAY--TSGKVVVAGKE--TEDFV 77 
WP_096057587  15 LSSY--TVKLDDAQMEKLRAICAaRH---WEQAEVAYTRFAFK------GeqAKVNVTAY--TSGKVVIAGKG--TEDFV 79 
WP_011160980  64 AFIkkilqMKTVSDNSEIKevshslvkqvptlktksnagtnSFLpLYNKKTYYLPSIGSDEVGTGDVFGPVIVCCVYLTA 143
WP_083759915  95 RGW-----RESRQGGPARRvr-----------------------gSAAPGPNPLPRIGIDEAGKGEYLGPLVVAGVRLSG 146
WP_048810207  66 QGV-----IEPEILGKAsig-------------------yeEVL----HPEYFEAHAGIDECGKGDLFGPLVVAAVFVDK 117
WP_012374917  79 TMT-----LEPEITGAAklg-------------------ydEV----LHPDWFEPHAGLDESGKGDFFGPVIAATVIAEK 130
WP_012616737  73 EAA-----LKAAIAGREVStpqt---------------adpSGT--LKNLAALPLLIGSDESGKGDYFGPLVVAAVCLDQ 130
WP_013044438  83 RDV-----LETQITGEArlg-------------------ydEV----HNPEWFTLHAGMDESGKGDLFGPLVTACVVADG 134
WP_009511923  81 RDV-----LEPEVTGAPklg-------------------ydEV----LHPDWFEAHAGLDESGKGDFFGPVVAATVIAER 132
WP_046298021  78 TMI-----LEPEVTGMAtlg-------------------ydEV----LHPDWFETHAGLDESGKGDFFGPLIAATVIGSK 129
WP_069960403  78 QNV-----IEAQVTGAAqlg-------------------ydEV----HHPDWFEPHAGLDESGKGDLFGPVVAATVIAEK 129
WP_096057587  80 RDT-----IEAEVTGAPklg-------------------ydEV----NHPDWFESHAGLDESGKGDFFGPVTTATVIADR 131
WP_011160980 144 -KNIVFLQKLGtIAESKKI-SDEKIMQLAPLIMKE-VI---YSVKIM-MPLEYNQTIKQ-----CNLNKIKALMHNEAIK 211
WP_083759915 147 aGDDLRLRELG-VRDSKAL-GAERVRRLARAVVEE-LGgeaVRVISL-APREYGRRREEa---gGNVNRLLAELNLEIVR 219
WP_048810207 118 -QSARFLVDAG-IKDSKRIkSDSRLFQLAMEVKKK-AP---YGFFSL-SPLQYNDLYEKk---fKNLNLLLAWAHAKAYQ 187
WP_012374917 131 -PAIEAWRKAG-VQDSKKI-AETRIIELDKLIRET-PGv-vVRTCYC-GMPKYNELMARp---gANLNRLLAWQHATALD 201
WP_012616737 131 -QGAARLRAAG-VTDSKAL-SDQENLSLASVVRKVaVS---ISVKVL-LPEEYNARYAAtaragGTLNDLLASVHAEAIQ 203
WP_013044438 135 -DMVRQWLELG-VADSKKL-TDNSILKLEKEIRKT-KGv-vIKTAFA-RMPKYNDLYHKf---dRNLNKLLAWYHSKSLI 205
WP_009511923 133 -SAIEAWRKAG-VQDSKKI-TGNRILELDRLIRET-PGv-vARAVYC-GMPKYNELMARp---rASLNKLLAWQHAKALL 203
WP_046298021 130 -SMIESWRAAG-AQDSKKI-TEGKILELDKIIRNT-HGv-vVKTILCsSMAQYNSLMGTr---fRSQNMILAFQHARALQ 201
WP_069960403 130 -PAIEAWRVAG-VRDSKSI-EDSQILRLDDVIRDT-PGv-vVETVYC-GMDKYNELMLKp---qANLNRLLAWQHARALE 200
WP_096057587 132 -DAVESWLAAG-VKDSKKI-SEGQIFKLEDVIRNT-RGv-vVETFSWeYMTKYNELMLRp---gANLNRLLAWQHAKGLL 203
WP_011160980 212 QTVLKAsPNVPVILDQFCFPKNYFNYLQDQKAqnEIYTKIIFETKADSSyFSVAVASVIARYLFLTQIAKLSKQINSKLQ 291
WP_083759915 220 SLARE--GVRAVVVDSFGERAR--SYIEgg---lPPGLRLEVRPRAEDD-VAVAAASVLARARYLEEMEALSRRVGVELP 291
WP_048810207 188 RLLQVQsDCHRVVCDRFAHPWVLKQSFEKIG----MQDALEQMTKAESD-PAVAAASILARAVFLEELSKLGKEIGFSLL 262
WP_012374917 202 QALAAK-PVKWGLLDQFTEQPLAQRELAKKG---VKEFELKMRTRAEED-PVVAAASVVARAEFVRQMHQLSKRFGAKLQ 276
WP_012616737 204 RVAAES-GCTTVLVDQFAGERVLDDLLAVRY----PGLRVVQRPRAEQE-TPVAAASVLARARFLEDLDLLGMPYNVHLL 277
WP_013044438 206 GALDER-PAPWGLLDQFTKEKLVDAYVKDR-----KDFKLVSRTKAESD-PVVAAASIVARAVYVREMKRLSEEAGEQLI 278
WP_009511923 204 QALGEK-PVPWGLLDQFSEQPLVQRELTRLGGa-PAGFDLRMRTKAEED-PVVAAASIVARAEYVRIMNMLSQRFGEPLQ 280
WP_046298021 202 EALKEK-AAPWGLLDQFTETPLVQRELVKLG---VTGFELRMRTKAEED-PVVAAASIVARAEYVRQMHKLSLEYGSKLQ 276
WP_069960403 201 AALQKK-WVGRGLLDQFTKEPLVQRELKKRG---LERFTLDMRTKAESD-PVVAAASVVARAEFVRQMRNLSREFGEKLL 275
WP_096057587 204 AALDRK-AVSWGLLDQFTEQPLVQKELAKKE---LKNFELKMRTKAEED-PVVAAASVCARAEYVRQMVKLSRKFGANLQ 278
WP_011160980 292 LGAGKLVDLQIDLIVKQHGLEILPQIAKCNFKNIVRKME 330
WP_083759915 292 RGSSERALEVARRVYEERGEEGLAEVAKLHFATTERVRQ 330
WP_048810207 263 RGASSKTVEQAREIYLNKGKEALRKVAKMHFKTIQKILP 301
WP_012374917 277 KGAGPLVKEQAAQIIAKFGARALGDFAKLHFRTAYEVVS 315
WP_012616737 278 KGASAGVTKQAAQMVDRYGSGVLRTVAKIHFRTTSKICR 316
WP_013044438 279 KGASGKVLEQAKKIVADKGADALKGFAKMHFKTAYEAQG 317
WP_009511923 281 KGASALVKKQGLAIMEKFGARALGDFAKLHFRTAWEIVK 319
WP_046298021 277 KGASAAVKVQAHDIINRFGARALGNFAKLHFRTAYEVVS 315
WP_069960403 276 FGAGAQAKAQAAQIVDRLGARALGRFAKLHFRTSYEVVA 314
WP_096057587 279 KGAGPLVKDQARGIIEKFGAKSLGEFAKLHFRTAYEVVS 317
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