Conserved Protein Domain Family
rsfS_iojap_ybeB

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TIGR00090: rsfS_iojap_ybeB 
ribosome silencing factor RsfS/YbeB/iojap
This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors]
Statistics
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PSSM-Id: 272901
Aligned: 92 rows
Threshold Bit Score: 78.6579
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_005784862   7 LIEKITEGIQEKKGKNIVIADLTNIDdTICKYFVICQGNSPSQVIAIVDSIKEFTrK-GAGTK-PSAIDGQRNAEWVAMD 84  Bacteroides
WP_011342353   6 QALLCASYALDKKAFDVRLLDVTGKS-SLTDFLLIVSGGSDRQVGAIAESIELGM-KkEHDVM-PLAVEGKQEGRWVLLD 82  Pelobacter carb...
WP_011025297   7 kvyKICRVLDEKKAFDVKILYIGELT-TIADYFIIATGTSSTHVQALADEVEKKL-G-EEGIF-VDHVEKDFASEWILMD 82  Caldanaerobacte...
WP_010943827  12 RALQCARFALDKKALDVKVLEIGRIS-SIADYLVLATGRSDKQAQAIADSVKKGL-K-KYG-K-VIDMEGLREGNWIVID 86  Geobacter sulfu...
WP_012200558   8 MVRLAFKALEDKKAEDIKVIEIGNIS-VIADYFVIANGNNPSQVEAMVGAVDEEL-A-KNGYQ-AKRIEGVKSSGWVLMD 83  Clostridium phy...
WP_011429483   1 MALSAARAAEEKKGGDIVLLDVSQIS-TLADYFLLISGYSLTQVRAIARAIEEKVwE-EWQQS-PRRIEGQESGSWILID 77  Synechococcus s...
WP_006852420   6 LAELAAEACDDRKGVDIQLIRVEEVS-SLADWLVIAGGQSDVQVKAMARSVEDRL-E-EEAQRlPLRKEGLNEGRWALLD 82  Synechococcus s...
WP_011185718  10 illiaaaaadarsGTDIVALDVSGPL-PLTDVFLLVSGRVERTVIAIASEVEDRL-N-EAGIR-TLRREGTSEGRWVLLD 85  Leifsonia xyli
WP_011775037  10 larhaaraaaDKLAEDIVALDVSERL-ALTDVFLIASAPTERQVNAIVDGIEEEL-M-KQDLR-PVRREGRSEGRWVLLD 85  Arthrobacter
WP_011132457   6 LVLMAAKACDIKKAQEIKLIKIDKVS-YISEWILIAEGLSDVQVRSITNSVEIELrE-KAKIE-PIRKEGVSEAKWALLD 82  Prochlorococcus...
WP_005784862  85 FSDVLVHVFLPEARNFYNLEHLW 107 Bacteroides
WP_011342353  83 YGDVMVHVFQQAVRQYYDLEGLW 105 Pelobacter carbinolicus
WP_011025297  83 YEDVVVHIFQQEAREFYSLERLW 105 Caldanaerobacter subterraneus
WP_010943827  87 YGDVIVHIFREELRSYYDLDGLW 109 Geobacter sulfurreducens
WP_012200558  84 FGDVVVHVFSKEDRLFYDLERIW 106 Clostridium phytofermentans
WP_011429483  78 YADLIVHVFMQEERDYYDLESFW 100 Synechococcus sp. JA-3-3Ab
WP_006852420  83 YGELIVHILQSQERSYYDLEAFW 105 Synechococcus sp. WH 8016
WP_011185718  86 FGDLVVHVFHEEDRMYYSLERLW 108 Leifsonia xyli
WP_011775037  86 YADIVIHVQHSEDRVFYALERLW 108 Arthrobacter
WP_011132457  83 YGDLIVNIFQPEIRKFYDLESFW 105 Prochlorococcus marinus
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