2L3F


Conserved Protein Domain Family
UDG-F6_HDG

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cd10032: UDG-F6_HDG 
Click on image for an interactive view with Cn3D
Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins
Uracil DNA glycosylase family 6 hypoxanthine-DNA glycosylase (HDG) lacks any detectable UDG activity; it excises hypoxanthine, a deamination product of adenine, from double-stranded DNA. Uracil-DNA glycosylase (UDGs) initiates repair of uracils in DNA. Uracil in DNA can arise as a result of misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.
Statistics
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PSSM-Id: 381682
Aligned: 50 rows
Threshold Bit Score: 118.066
Created: 2-Dec-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       #####                              #                          
2L3F_A      4 RGFPAVLde--nTEILILGSLPSd-------------ESIRKq---QYYGNPgNDFWRLVGHAIGenlq----------- 54  Methanosarcina ace...
ACM63448    6 HPFEPFFde--nSKVLVLGSFPSi-------------KSREEn---FYYQHSkNRFWRIFEILFEcel------------ 55  Campylobacter lari...
ABR34946    6 QMLEPIYde--kSRILILGTFPSv-------------QSREAq---FYYANArNRFWKVIAGIFDcne------------ 55  Clostridium beijer...
ABK83351    4 HPFKPVFds--rSKILILGSFPSv-------------KSREMg---FYYAHSqNRFWKVLIALFGseh------------ 53  Campylobacter fetu...
NP_972217  17 HPFEAYVle--nTNTLILGTFPGkkf---------tdPNKENdkedWYYGTDrNEFWALIEYALGckrn----------- 74  Treponema denticol...
CAO80088    7 HPYKPFIpk--dAKVLLLGSAPPyrfc------tgnaNDLKNkdmdYYYGSNsNLLWEILFNAFEpdkidkisslrslee 78  Candidatus Cloacam...
ADK31987    8 HLFSDTNfffddSDILILGSFPVplytqeekfnllndEDKNNs---WYYSSKkSEFWKLIAYSFDidnkd---------- 74  Brachyspira pilosi...
ADG94389    6 HPYKPFLnq--nTEKIIVGTLPPprf---------ctKEFKErdvdFCYGSKdNLLWQAINKIYSlnlafe--------- 65  Arcobacter nitrofi...
AAF41115   38 HPFDPVLpp--kAAVMMMGTFPPk-------------EDKRAm--qFHYPNFqNDMWRVYGLVFFndaahfqr------- 93  Neisseria meningit...
ADG61193   14 HPLPPFTpp--nACVMMLGSFPPp-------------PERWAm--pFYYPNYnNDMWRILGLVFFddakrfid------- 69  Moraxella catarrha...
Feature 1                              #                                           # #        
2L3F_A     55 ------dmaYEKKLKTLKHNRIGLWDVFKAGSRe---GSQDSKIGDEEIN-DFSGLKEmvpkLRLICFNGRKAGEYEPLL 124 Methanosarcina ace...
ACM63448   56 -------ktVQEQKTFLKANHIALWDVIASCKIk---NSDDKTISYAKAN-DINIILDka-nIEKICVLGKVASKYFTKF 123 Campylobacter lari...
ABR34946   56 ------antTFDKKDMLLNNGIALWDVIESCEIt---GSSDSSIKNVVPA-DLSIVLNna-sIEKIYANGDKAFKLYMKY 124 Clostridium beijer...
ABK83351   54 ------lrnVQDKIDFLLKHQVAIHDAAYSCSVk---GSSDNSISSVKPA-NLDLIFEna-dIKAVFANGNTSYAICKKF 122 Campylobacter fetu...
NP_972217  75 -----slqtKDEKQKFLTEHKIGITDIIKKARRrq-nNNLDINLNVIEIT-NLDFIIDkckdIHMIILTSKDMYTRFFIP 147 Treponema denticol...
CAO80088   79 drkiktacqVDFLQSFLARNQLGMADILLKFSRkg-tSAEDYKLTVLEYQ-DILGILYnnssLTKILCTSKNRVHYWLMD 156 Candidatus Cloacam...
ADK31987   75 -----flvsKELKKKLFYDKKVAIADVFYKCKRknknSSKDTDLIVVEYNnLIVDIIKn---IKLIIFTSRFTENNFFKI 146 Brachyspira pilosi...
ADG94389   66 ----ntkeeINKRKEFLLKQKIGICDIVESCNRek-iDASDIGMSEIVLR-DILGYIKeyknIKTIIFTGGLCKNSPEYF 139 Arcobacter nitrofi...
AAF41115   94 --lsekafdAEKIKAFLHERGIASCPTVLKAVRqh-gNASDKFLKVVETV-DLAAVLAkipeCRHICTTGGKATEILLDI 169 Neisseria meningit...
ADG61193   70 --stnktfyQDAIEQFLTKTGIAIGDTAEQVIRqk-dNASDQFLQIVTPA-DIEKTLKqlprCHAFITTGKKATEVLCQQ 145 Moraxella catarrha...
Feature 1                                        ## #####
2L3F_A    125 rg-------------------------mGYETKVLPSSSGANR 142 Methanosarcina acetivorans
ACM63448  124 y--------------------------pEQEFFELPSSSPANM 140 Campylobacter lari RM2100
ABR34946  125 typ-----------------------iiKRDIIKLPSTSPANA 144 Clostridium beijerinckii NCIMB 8052
ABK83351  123 y---------------------------NFEVIKLPSTSPANA 138 Campylobacter fetus subsp. fetus 82-40
NP_972217 148 yyvkk------------------ynaifKEDKNKEPETHEEKG 172 Treponema denticola ATCC 35405
CAO80088  157 ylkqqkhynlieirdngnslvlknnpqrEIKIGILPSPSARSV 199 Candidatus Cloacamonas acidaminovorans
ADK31987  147 ln------------------------dnNIKYNLIESEEKNIL 165 Brachyspira pilosicoli 95/1000
ADG94389  140 lrqilkkqnisleivldkipkkhqfeydNRVIQTISLTSPSNA 182 Arcobacter nitrofigilis DSM 7299
AAF41115  170 qgggikmpktg-------etvpfpfagrDLTLTRLPSTSRAYP 205 Neisseria meningitidis MC58
ADG61193  146 ftsqkipnig--------eqvqllianrRIDLYRLPSSSRAYP 180 Moraxella catarrhalis RH4

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