2YLN,3ZSF


Conserved Protein Domain Family
PBP2_Ngo0372_TcyA

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cd13711: PBP2_Ngo0372_TcyA 
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Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold
This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270429
Aligned: 19 rows
Threshold Bit Score: 311.538
Created: 18-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:2YLN; Neisseria Gonorrhoeae L-cystine ABC transporter binds L-cystine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  #                                     #                ###      #     
2YLN_A        57 GTVTVGTEGTYAPFTYHDkdGKLTGYDVEVTRAVAEKLGvKVEFKETqWDSMMAGLKAGRFDVVANQVgltSPERQATFD 136 Neisseria gonor...
ACJ34666      42 GELKIGTEGTYPPFTFHDetGELTGFDVEIAREVAKRLGvKPVFIETkWDAMFAGLDAKRFDMIANQVg-iRPDRQEKYD 120 Anoxybacillus f...
ABR08652      34 GTLTIGMEGTYAPYAYRAkdGKLTGFEVELARDTAKRMGlKPKFVTTgWDSLIAGLGSNQYDVIFNDMw-vNPARKKQFR 112 Lactobacillus s...
YP_001853963  40 GEVRIGMEGTFRPYGYHDdsGALVGYEKEIGDLIAKDLGvRATYVETqWDSLIAGVDAGRYDLVMNNIa-pTAERRENFD 118 Kocuria rhizoph...
ACC70713      34 GALKIGTEGTYAPFTYHDasNQLTGFDVEIGRAIAQKLGvKAEFIEGkWDGLIAGLDANRYDAVINEVa-vTDARKQKYD 112 Burkholderia ph...
NP_104873     44 GVIKVGTEGTYAPFTYHDasGALVGFDVEIAKAIADKLGvKVEFLEGkWDGLIAGLDVKRYDAVINEVg-iTDARKAKYD 122 Mesorhizobium loti
ADP11582      34 GTLKIGTEGTYPPFSYHDtsGKLIGFDVEIGREVAKRLNvKAEFVEAkWDGLIAGLDARRYDAVINQVa-iTAPRQQKYD 112 Erwinia sp. Ejp617
AAK81257      44 GKLRIGTEGTYAPFTFHDskGNLTGFDVDIAKEVSKRIGvKPEFVETkWDGMFAGLDAGRFDVVLNEVa-iKPDRKVKYD 122 Clostridium ace...
BAH49820      37 GVLKVGTEGTYTPFSYQGpdGQLTGYDVDVIRAVGDKLGvSVEFTQTpWDSIFAGLEAKRYDLVANQVt-vNDERTQKYD 115 Rhodococcus opa...
AAC45332      41 GELTIGLEGTYSPYSYRKn-NKLTGFEVDLGKAVAKKMGlKAKFVPTkWDSLVAGLGSGKYDVVMNNIt-qTPERAKQYN 118 Lactobacillus r...
Feature 1                                          #   ##                                 #      
2YLN_A       137 KSEPYSWSgAVLVAHnd-snIKSIADIKGVKTAQSltSNYGEKAKAAGAQLVPVdgLAQSLTLIEQKRADATLNDELAVL 215 Neisseria gonor...
ACJ34666     121 FSNPYITSaAVLVVHkenkeIKSFEDIKGKKAAQSmtSNYAELARSYGAEVVGVegFNQAIELLSSKRVDATMNDKLSVL 200 Anoxybacillus f...
ABR08652     113 YATPYIYSkSVLISKp----GLKMSNLKGKMIAAGtgTENWTTAEKLGAKVVAApdFQTDMDMINQGRADGAVNSEAAFN 188 Lactobacillus s...
YP_001853963 119 FSIPYAISqGRAGVAqd-spLTSVDEISGHTSAQTetSNFGKSMAALGAQLVPTtgFDEAIMLVTFGRVEMTANDFVTFQ 197 Kocuria rhizoph...
ACC70713     113 FSEPYIVShAALIVRsdnssIKGFDDLKGKKSANTltSNFGKIAAAHGAEVVPVqgFNESIDLLTSGRVDATVNDSLSFL 192 Burkholderia ph...
NP_104873    123 FSDPYIASkAVLIVRgdntdIKTFADLKGKKSAQSltSNFGKLAEASGAELVGTdgFDQSIQLLLTGRADATINDSLSFL 202 Mesorhizobium loti
ADP11582     113 FSVPYISSrAVLIVRsnnsaIKSFDDLKGKKSAHTltSNFAQLATRYGAQVVGTdgFNQSVDLVASGRADATINDNLSYL 192 Erwinia sp. Ejp617
AAK81257     123 FSTPYITSrAVLIVKkdnntIKSFSDLKGKKSAQSltSNLGNIAKNNGAELIQVdgFNEAVDLLTSNRVDATINDSLSYL 202 Clostridium ace...
BAH49820     116 LSTPYTYSeGVIVTRaddnaITSLADLNGKTTAQSatSNWAQVARDAGANVESVegFVQAITLLKDGRVDATVNDNLAVA 195 Rhodococcus opa...
AAC45332     119 FSTPYIKSrFALIVPad-skIKSLKDIKGKKVVAGtgTNNADIAKKFGAKLVPNgdFASAVGMIKQGRADAEINSREAWY 197 Lactobacillus r...
Feature 1                                                                            
2YLN_A       216 DYLKKNpnaGVKIVWsap-adeKVGSGLIVNKGNd--EAVAKFSTAINELKADGTLKKLGEQFFGKDI 280 Neisseria gonorrhoeae
ACJ34666     201 DFLKQKpdaPIQIVAth---ddASQSGLMFRKGSd--TLVEAVNKALKEMMEDGTYTKISEKWFGEDV 263 Anoxybacillus flavithermus WK1
ABR08652     189 YWKKSHkdtDLTYQVipykyikIEPIAPMLNKKSt--KLTKEMNKALKAEQKDGTIKKLSLKYFGKDL 254 Lactobacillus sanfranciscensis
YP_001853963 198 AFFEQRpdaRIRLLDgqv--gdASESAVLMARNQp--RLRAAVDKSLTTHMDNGDLAKIFEKYVSTDL 261 Kocuria rhizophila DC2201
ACC70713     193 DFKKHKpdaKVKIAAvetasdsSDHSAVLIRKGNp--ELQAAINKALAEIKADGTYAKISEKYFGKDV 258 Burkholderia phymatum STM815
NP_104873    203 DFKKHKpdaNVKIAAqe---enADYSGVIVRKGDa--ELVAAINKALADIKADGTYKKIADTYFGQDV 265 Mesorhizobium loti
ADP11582     193 DFKKHRpdvKVKIAAtl---paAEDEGILLRKDNp--ELKAAIDKAISDIKSDGTYQRISQHYFGADV 255 Erwinia sp. Ejp617
AAK81257     203 DLKKQKpdaPIKSVAny---nnASESAAMFKKGSnnkELIAAVNKALKDMKSDGTYLKISKKWFGTDV 267 Clostridium acetobutylicum
BAH49820     196 EYQKQTgdtGVKIAAet---gdTSEQAFAARKDS---GLMPDIDKALDELRADGTLAQISQKYFGTDV 257 Rhodococcus opacus B4
AAC45332     198 AYSKKNstkGLKMIDvss-eqkPAKISALFNKKDt--AIQSSYNKALKELQQDGTVKKLSEKYFGADI 262 Lactobacillus reuteri

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