Conserved Protein Domain Family
SdrD_B

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pfam17210: SdrD_B 
SdrD B-like domain
This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.
Statistics
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PSSM-Id: 435789
Aligned: 43 rows
Threshold Bit Score: 101.908
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Thivi_2278   1360 ASLGDRVWLDKDGDGKQ-DSDEtTGVAGVTVNLkgagadgafGTADDIAA---STTTDASGNYAFTSLTAGKYQVTFdaT 1435
Q5HRI6            674 YSLGNYVWYDTNKDGIQ-GDDE-KGISGVKVTL---------KDENGNIIs--TTTTDENGKYQFDNLNSGNYIVHF--D 738  Staphyloc...
Q2G0L4           1014 YSLGDYVWYDSNKDGKQ-DSTE-KGIKDVKVTL---------LNEKGEVIg--TTKTDENGKYCFDNLDSGKYKVIF--E 1078 Staphyloc...
Q2G0L4            682 YNLGDYVWEDTNKNGIQ-DQDE-KGISGVTVTL---------KDENGNVLk--TVTTDADGKYKFTDLDNGNYKVEF--T 746  Staphyloc...
Q2G0L5            497 YNLGDYVWEDTNKDGKQ-DANE-KGIKGVYVIL---------KDSNGKELd--RTTTDENGKYQFTGLSNGTYSVEF--S 561  Staphyloc...
Q2G0L4            793 YNLGNYVWEDTNKDGKQ-DSTE-KGISGVTVTL---------KNENGEVLq--TTKTDKDGKYQFTGLENGTYKVEF--E 857  Staphyloc...
jgi:Amir_0570    1719 GAIGDFVWDDLNRNGLQ-DAGE-PGIAGVKVNL---------LDEQGEVKs--STTTNASGKYMFGDLDEGTYRVQF--T 1783
AORICAS:Z0008024  302 DEIGEFVWDDVDRNGLQ-DAGE-PGVQGVKVTL---------KDASGKALg--TITTDAGGKYRFTKLKDGIYQVCF--D 366 
DU:RAM_47575      313 AKIGDFVWADRNRDGLQ-DPDE-PGVAGVKVTL---------KDGAGGTIg--TATTDDKGKYGFEKLKDGTYQVCF--A 377 
CCH02373         2041 GSIGNYVWFDYNNDGTQgDPAVePGVSGATVQL---------YAANNLTTpiaTTTTSSTGAYLFSNLPSGQYVVKF--T 2109
jgi:Thivi_2278   1436 TaGSGY-VLTKQNAGSDDAKDSDA--DRSTG-KSQIVTLATG-E---ANTTVDAGL 1483
Q5HRI6            739 K-PSGM-TQTTTDSGDDDEQDADG--EEVHV-TITD-------H---DDFSIDNGY 779  Staphylococcus epidermidis RP62A
Q2G0L4           1079 K-PAGL-TQTVTNTTEDD-KDADG--GEVDV-TITD-------H---DDFTLDNGY 1118 Staphylococcus aureus subsp. aure...
Q2G0L4            747 T-PEGY-TPTTVTSGSDIEKDSNG--LTTTG-VING-------A---DNMTLDSGF 787  Staphylococcus aureus subsp. aure...
Q2G0L5            562 T-PAGY-TPTTANVGTDDAVDSDG--LTTTG-VIKD-------A---DNMTLDSGF 602  Staphylococcus aureus subsp. aure...
Q2G0L4            858 T-PSGY-TPTQVGSGTDEGIDSNG--TSTTG-VIKD-------K---DNDTIDSGF 898  Staphylococcus aureus subsp. aure...
jgi:Amir_0570    1784 V-PTGR-TFTAQNAGAPEK-SSAV--DRSNG-LSGPIVFKVAdSkvmQNMNVDAGV 1833
AORICAS:Z0008024  367 IaGLPF-TYTAKDAGDDTK-DSDA--DPATG-CTATTTVGPRkR---VDLTLAAGL 414 
DU:RAM_47575      378 V-PADF-TVTRRDAGSDDR-DSDA--DPGG--CTAPRTVGAPsH---EDFAVDLGL 423 
CCH02373         2110 A-PNGTvFATPKKPGVGDELDSDAneDGLTDvITIDVTQPIS-StarNNPNVDAGI 2163
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