Conserved Protein Domain Family
PRK05298

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PRK05298: PRK05298 
excinuclease ABC subunit UvrB
Statistics
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PSSM-Id: 235395
Aligned: 1016 rows
Threshold Bit Score: 1035
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
167628796   2 EQRLFQLKSEFVPKGDQPQAIARLVEGIEKGMRYQTLLGATGTGKTFTMASVIEKVQRPTLVLAHNKTLAAQLCAEFKEF 81 
45658769    1 MASVFKIHSAYQPAGDQVKAIQNIADSFQKGEKKVTLVGVTGSGKTFTMAQVIQNLGLPTLVLSHNKTLAAQLFREFKEF 80 
24213349    1 MASVFKIHSAYQPAGDQVKAIQNIADSFQKGEKKVTLVGVTGSGKTFTMAQVIQNLGLPTLVLSHNKTLAAQLFREFKEF 80 
189910370   1 -MANFKMVSPFKAAGDQVKAIENIAKSFGEGKNKITLVGVTGSGKTFTMAEVITRVKKPTLILSHNKTLAAQLFREFKEF 79 
116327526   1 MASIFKIHSAYKPAGDQIKAIENIADSFQKGAEKVTLVGVTGSGKTFTMAQVIQNLGLPTLVLSHNKTLAAQLFREFKEF 80 
116331861   1 MASIFKIHSAYKPAGDQIKAIENIADSFQKGAEKVTLVGVTGSGKTFTMAQVIQNLGLPTLVLSHNKTLAAQLFREFKEF 80 
297620436   1 --mRFKLHTDYQPRGDQPQAIEKLAAGIEEGRKSQVLLGITGSGKTFTMANVIQKVQRPTLVMAHNKTLAAQLYQEFKAF 78 
46445808    3 PSQLFQLHTEFEPCGDQPEAINQLVASILQNKRSQVLLGITGSGKTFTMANVIAKVQRPTLILAHNKTLAAQLYQEFKAF 82 
62185531    1 --mTFELRAAFSPCGDQPEAIAKLTQGVRNRTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLAHNKTLAAQLYQEFKEF 78 
89897859    1 --mTFELRADFAPCGDQPAAIAKLTQGVRNQAQFQVLLGTTGSGKTFTIANVVANINRPTLVLAHNKTLAAQLYQEFKEF 78 
167628796  82 FPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRHAATAALIERRDVIIVASVSCIYGLGSPEEYLDQMIS 161
45658769   81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKLRLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVA 160
24213349   81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKLRLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVA 160
189910370  80 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDMSMNEEIDKLRLRATSSLLERDDVIIVSSVSCIYGLGSPEDYMNSVVM 159
116327526  81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKLRLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVA 160
116331861  81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKLRLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVA 160
297620436  79 FPENAVEYFVSYYDYYQPEAYIPRTDTFIEKDMSINDRIDKMRLSATRSLLEREDVLIVASVSCIYGLGSPEYYRGMNLH 158
46445808   83 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDMSINDKIDKMRLSATRSLLERSDVIIVSSVSCIYGLGSPEYYRGMNLT 162
62185531   79 FPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRLSATRSILERRDTLIVSSVSCIYGIGSPENYTSMALE 158
89897859   79 FPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRLSATRSILERRDTLIVSSVSCIYGIGSPDNYASMALE 158
167628796 162 LRKGQIYDRDAVLRRLVDIQYSRNNINFTRGTFRVRGDVVEVFPASYSDRAVRLEFFGDELERISEIDTLTGEVYGERYH 241
45658769  161 LKVGDTIERDTVIRKLLHIQYNRNDLDFSRGNFRVRGDSIEIYPA-YHTDGIRIEFFGDEIDSISRINPVTAQTIFKLEK 239
24213349  161 LKVGDTIERDTVIRKLLHIQYNRNDLDFSRGNFRVRGDSIEIYPA-YHTDGIRIEFFGDEIDSISRINPVTAQTIFKLEK 239
189910370 160 LQVGDKIDRDQIIRKFLHIQYARNDIDFSRGNFRVRGDTIEIMPS-YQEEGIRIELFGDEIDGLSKIDPLTGKVKIKLDR 238
116327526 161 LKTGDTIERDAVIRKLLHIQYNRNDIDFSRGNFRVRGDSIEIYPA-YHTDGIRIEFFGDEIDSISRINPITAQTILKLEK 239
116331861 161 LKTGDTIERDAVIRKLLHIQYNRNDIDFSRGNFRVRGDSIEIYPA-YHTDGIRIEFFGDEIDSISRINPITAQTILKLEK 239
297620436 159 IKTGVEYRRDDLLLHLVEMQYKRNDYDFFRATFRVRGEIIDIFPAYEEDLALRLEFFGDELERLTEIDPLTGKMIRLIDE 238
46445808  163 LSQGQMRRRDDILLHLVEMQYKRNDFEFIRSTFRVRGDVLDIFPAYEEDLAIRVEMFGDEIEQISEIDPLTGKVKRRIAS 242
62185531  159 LTVGTEYPRALLASQLVKMHYQASSVP-QRSTFRERGSVIDIFPAYESELAIRLEFFNDTLTSIDYSDPLTMMPKESVTS 237
89897859  159 LEIEKEYPRSLLTSQLVKMNYQASPVA-QRATFRERGSVIDIFPAYESDRAIRLAFFNDTLTSIEYNDPLTMMPLESVAS 237
167628796 242 ISIFPNTHYVTNWDKLELSIANIEAELEERLAWFKEQGKLVEAQRLAQRTRYDIEMLREMGFCTGIENYSRHLTFRPPGE 321
45658769  240 AYIYPAKHFITSGPKVKEAVENIRAEVDAQTDFFRKNNKLLEAERILSRTNYDMEMLQEMGYCNGIENYSRHLTGRKPGE 319
24213349  240 AYIYPAKHFITSGPKVKEAVENIRAEVDAQTDFFRKNNKLLEAERILSRTNYDMEMLQEMGYCNGIENYSRHLTGRKPGE 319
189910370 239 VVVYPAKHFITSGPKIKDAMEKIKEEMAAQKEYFLKQGKHLEAERIESRTNYDMEMLLELGYCSGIENYSRHLTGRAEGE 318
116327526 240 TYIYPAKHFITSGPKVKVAIENIKAELEAQALFFRKNDKLLEAERIISRTNYDMEMLQEMGYCNGIENYSRHLTGRKAGE 319
116331861 240 TYIYPAKHFITSGPKVKVAIENIKAELEAQALFFRKNDKLLEAERIISRTNYDMEMLQEMGYCNGIENYSRHLTGRKAGE 319
297620436 239 ATIYPSSHHVTPEEIRLQAIETIKAELEERMAYFDREKKLIELQRIQERTRYDLEMIKEVGFCKGIENYSRHFGRREEGQ 318
46445808  243 ITIYPSSHHVTPEEIRLKAMETIRAELDERRQFYETEKKYLELERIQQRTMYDLEMLKEVGTCKGIENYSRHFSMRQPGA 322
62185531  238 VILYPGSHYVTPEAVREQAIRSIREELEERLAF--FQDRPIEQDRLFHRTTHDIEMIKETGFCKGIENYSRHFTNTPPGA 315
89897859  238 VIIYPGSHYVTPEAVREQAIRSIREELEERM--LFFHDRPIEQDRLFQRTIHDIEMIKETGFCKGIENYSRHFTKTPPGS 315
167628796 322 PPYTLMHFFPK-DFLLMVDESHVTIPQVGAMYQGDRSRKMTLIEHGFRLPSAADNRPLKFHEFEQMLNQVVFVSATPADY 400
45658769  320 RPACLIDYFQG-EFLLIVDESHVTIPQIGGMFAGDRARKQTLVDFGFRLPSALDNRPLNFQEFETLTPRTLYVSATPAEY 398
24213349  320 RPACLIDYFQG-EFLLIVDESHVTIPQIGGMFAGDRARKQTLVDFGFRLPSALDNRPLNFQEFETLTPRTLYVSATPAEY 398
189910370 319 RPACLLDYFPGkDFLLIIDESHVTLPQIGGMYAGDRSRKQTLVEFGFRLPSALDNRPLNFTEFEAMTPRTLYVSATPDQN 398
116327526 320 RPACLIDYFQG-EFLLIVDESHVTIPQIGGMFAGDKARKQTLVDFGFRLPSALDNRPLNFEEFETLTPKTLYVSATPADY 398
116331861 320 RPACLIDYFQG-EFLLIVDESHVTIPQIGGMFAGDKARKQTLVDFGFRLPSALDNRPLNFEEFETLTPKTLYVSATPADY 398
297620436 319 APSCLLDYFPS-NYLLIVDESHQTIPQLHAMFNGDRARKQSLVDFGFRLPSAYDNRPLRFEETYSRINQVVYVSATPGEW 397
46445808  323 PPPCLLDYFPS-DYLLVIDESHQTLPQVHAMFNGDRARKQTLVDFGFRLPSAFDNRPLRFEEVYGRIHQVVYVSATPGAW 401
62185531  316 PPTCLLDYFPE-DFLLVIDESHQTLPQIRAMYRGDFSRKQSLVEYGFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGET 394
89897859  316 PPACLLDYFPE-DFLLVIDESHQTLPQMRAMYRGDLSRKQSLVEYGFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGEM 394
167628796 401 ELQRSE--QVVEQIIRPTGLIDPVIDVRPVKGQIDDLLGEIRERIKKD-QRVLVTTLTKKMAEDLTAYLRNVGVRVRWMH 477
45658769  399 EIEKSS--KVVEQIIRPTGLLDPIVDVRPTKNQIEDLLVEIRKRIDAG-ERVLVTTLTKKMSEDLTDYYEEIGLKVAYLH 475
24213349  399 EIEK-Ss-KVVEQIIRPTGLLDPIVDVRPTKNQIEDLLVEIRKRIDAG-ERVLVTTLTKKMSEDLTDYYEEIGLKVAYLH 475
189910370 399 ELNKSE--AVFEQIIRPTGLLDPVVEVRPTTNQIEDLLNEIRLRINQK-ERVLITTLTKKMSEDLTDYYKEVGLKIAYLH 475
116327526 399 EMEK-Ss-KVVEQIIRPTGLLDPIVEVRSTKNQIEDLLVEIRKRIDVG-ERILITTLTKKMSEDLTDYYKEIGLQVAYLH 475
116331861 399 EMEKSS--KVVEQIIRPTGLLDPIVEVRSTKNQIEDLLVEIRKRIDVG-ERILITTLTKKMSEDLTDYYKEIGLQVAYLH 475
297620436 398 EIKEAAg-LLVEQVIRPTGLLDPIIETRPAVGQVDDALDEIRRETLKG-NRVLVTTLTKRLAEELTNYLVDLNIKAKYLH 475
46445808  402 EVQEAGg-EIVEQLIRPTGLLDPIIEIRPASGQVDDCLAEIRSHVSKG-GRVLLTTLTKKLSEELTTYLNDLNVKAKYLH 479
62185531  395 ELNESQg-HIVEQILRPTGIPDPIPEIRPATGQVDDLLEEIRKRLSKSqEKILVISITKKLAEDIAAFLSELDIAAAYLH 473
89897859  395 ELNE-SrgHVVEQIIRPTGIPDPIPEIRPATGQVDDLLEEIRKRLSKSqEKILVISITKKLAEDIAAFLSELDIAAAYLH 473
167628796 478 SDVDAIERMQIIRDLRLGEFDVLVGINLLREGLDLPEVGLVAILDADKEGFLRSDRSLIQTIGRAARNVEGTVIMYGDRL 557
45658769  476 SEVETLDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRAARNVNGTAILYADKT 555
24213349  476 SEVETLDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRAARNVNGTAILYADKT 555
189910370 476 SEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRM 555
116327526 476 SEVETLDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRAARNVNGTAILYADKI 555
116331861 476 SEVETLDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRAARNVNGTAILYADKI 555
297620436 476 SDIDTIERVQIIQDLRLGLFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSETSLIQTCGRAARNENGRVIMYCDKL 555
46445808  480 SDIDTIERVQIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAARNAEGRVIMYADKI 559
62185531  474 SGIETAERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAARNVDGKVIFYADHK 553
89897859  474 SGIETAERTRILTDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAARNVEGKVIFYADQK 553
167628796 558 TRSMQKAIDETNRRRAIQIAYNEQQGITPQTVKKA-VRNVIe-----------------MTIS----Ggdrkeaagaatt 615
45658769  556 TDSMAKAIEETKRRRKIQEDHNLKFGITPLTIKKE-VGDIIereekertsedlv-------------------------- 608
24213349  556 TDSMAKAIEETKRRRKIQEDHNLKFGITPLTIKKE-VGDII------------------EREEk--eRtsedlvled--- 611
189910370 556 TDSIKKAMSETERRRLIQEAHNEKMGITPQTIQKE-IHDILpremaeedskeealkdleKEFT----------------- 617
116327526 556 TDSMAKAIDETKRRRKIQEDHNLKFGITPLTIRKE-VNDII------------------EREEk--kRtsedlvled--- 611
116331861 556 TDSMAKAIDETKRRRKIQEDHNLKFGITPLTIRKE-VNDIIereekkrtsedlv-------------------------- 608
297620436 556 TKSICRTIEITEKRRANQEAFNREHGITPHTVKRE-ISSLAvpgaeanvsypmp-------------------------- 608
46445808  560 TKSIKRTLEITESRRALQMRYNEQHGITPRTVKRE-ISVLMeseedqvthptkle------------------------- 613
62185531  554 TLSIEQTLKETERRRHIQLEYNKANNITPKPIIKA-----Ifanpip-------qggkkAVQDtpqkP------------ 609
89897859  554 TQSIEQTLKETERRRKIQLEYNKAHNITPQPIIKAiLANPIpqgrkqet------------------------------- 602
167628796 616 gggvlaraaaflkkrtgkkgaesavdawttqaaapgegaygtgyagddgarvlregghgggagtyevssdrsadrvaegl 695
45658769      --------------------------------------------------------------------------------    
24213349      --------------------------------------------------------------------------------    
189910370     --------------------------------------------------------------------------------    
116327526     --------------------------------------------------------------------------------    
116331861     --------------------------------------------------------------------------------    
297620436     --------------------------------------------------------------------------------    
46445808      --------------------------------------------------------------------------------    
62185531      --------------------------------------------------------------------------------    
89897859      --------------------------------------------------------------------------------    
167628796 696 ppeegfeaaapervasseaMAPe-QLAALIADLEGEMRQAAKELDFERAALLRDVIIELK--GAAPAKS 761
45658769  609 -------ledvekkfnskkFPNk---eVLKEKLREEMMKAAKELDFERAAILRDKMLSIQ--TEDSSAK 665
24213349  612 ----------vekkfnskkFPNk---eVLKEKLREEMMKAAKELDFERAAILRDKMLSIQ--TEDSSAK 665
189910370 618 -------------------LKKykTKDKLREALKREMLRYANDMDFEKAAMFRDKMLALG--PDKIET- 664
116327526 612 ----------vekkfnskkFPNk---eVLKDKLREEMMKAAKELDFERAAILRDKMLSIQ--INDPSTE 665
116331861 609 -------ledvekkfnskkFPNk---eVLKDKLREEMMKAAKELDFERAAILRDKMLSIQinDPSTEN- 666
297620436 609 ------qkelmaaeephpyLTLe-EVRKKVAEYEGKMKKAAKEMQFEDAARYRDQLFKYQ--KLEMSLS 668
46445808  614 ------eeifkaaeeahhyLTLd-EVRLKIKECEKEMKKAAKEFRFEEAADWRDQMRRYQ--QIELTLA 673
62185531  610 -------------------LSTq-ELEKLIKKYENLMLQAANAFRFDEAAQYRDKMKAAK--EQLLYLS 656
89897859  603 ------------qdnlkmpLSTk-ELEKLIKKYENLMQQAAHEFRFDEAAKYRDKMKAAK--EQLLYLS 656
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