Conserved Protein Domain Family
B-CoV_A_NSP1

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pfam11963: B-CoV_A_NSP1 
Betacoronavirus, lineage A, NSP1
This family the N-terminal region of the Betacoronavirus polyprotein which contains non-structural protein 1 (Nsp1) from Betacoronavirus lineage A. This protein is important for viral replication and pathogenesis. It suppresses the host innate immune functions by inhibiting type I interferon expression and host antiviral signalling pathways.
Statistics
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PSSM-Id: 152398
Aligned: 4 rows
Threshold Bit Score: 583.824
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q66WN6    1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRVNCSRLPALECCVQSAIIRDI 80   Murine hepatitis virus
Q80GN7    1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRVDCSRLPALECCVQSAIIRDI 80   Murine hepatitis virus
Q06BE1    1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMVDCRRLLKQECCVQSSLIREI 80   Bovine coronavirus ...
Q0ZJA3    1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKIDCRCILGQEWHVQSNLIRDI 80   Human coronavirus HKU1
Q66WN6   81 FVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLGVLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGV 160  Murine hepatitis virus
Q80GN7   81 FVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGV 160  Murine hepatitis virus
Q06BE1   81 VMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRGCSPKGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGV 160  Bovine coronavirus ...
Q0ZJA3   81 FVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLGGFPKGYVMGLFRSY--------KTKRYVVHHLSMTTST-T 144  Human coronavirus HKU1
Q66WN6  161 CLGNGRFIGWFVPVTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDAceEVHLNPKGKYSCKAYA 240  Murine hepatitis virus
Q80GN7  161 CLGNGRFIGWFVPVTAIPEYAKQWLQPWSILLRKGGNKGSVTSRHFRRAVTMPVYDFNATDV--VYADENQDDDADDPVV 238  Murine hepatitis virus
Q06BE1  161 CFGAGQFVGWVIPLAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE-HVYNFKVEDAydLVHDEPKGKFSKKAYA 239  Bovine coronavirus ...
Q0ZJA3  145 NFGE-DFFGWIVPFGFMPSYVHKWFQFCRLYIEE--------SDLIISNFKFDDYDFSVEAAyaEVHAEPKGKYSQKAYA 215  Human coronavirus HKU1
Q66WN6  241 LLKGYRGVKPILFVDQYGCDYTGCLAKgleDYG-DLTLSEMKELFPVWRDSLDSEVLVAwhVDRDPRAAMRlqtlATVRC 319  Murine hepatitis virus
Q80GN7  239 LVADTQEEDGVAKEQVDSADSEICVAH---TGGqEMTEPDVVGSQTPIASAEETEVGEA--CDREGIAEVK----ATVCA 309  Murine hepatitis virus
Q06BE1  240 LIRGYRGVKPLLYVDQYGCDYTGGLADgleAYA-DKTLQEMKALFPIWSQELPFDVTVAwhVVRDPRYVMRlqsaSTIRS 318  Bovine coronavirus ...
Q0ZJA3  216 LLRQYRGIKPVLFVDQYGCDYSGKLADclqAYG-HYSLQDMRQKQSVWLANCDFDIVVAwhVVRDSRFVMRlqtiATICG 294  Human coronavirus HKU1
Q66WN6  320 IDYVGQPteDVVDGDVVVREPAHLLAANAIVKRLPR 355  Murine hepatitis virus
Q80GN7  310 DALDACP--DQVEAFDIEKVEDSILSELQTELNAPA 343  Murine hepatitis virus
Q06BE1  319 VAYVANPteDLCDGSVVIKEPVHVYADDSIILRQHN 354  Bovine coronavirus isolate Alpaca
Q0ZJA3  295 IKYVAQPteDVVDGDVVIREPVHLLSADAIVLKLPS 330  Human coronavirus HKU1
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