1PUG,3F42


Conserved Protein Domain Family
DNA_YbaB_EbfC

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TIGR00103: DNA_YbaB_EbfC 
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DNA-binding protein, YbaB/EbfC family
The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]
Statistics
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PSSM-Id: 211546
Aligned: 10 rows
Threshold Bit Score: 78.2475
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1PUG_A         1 MFGKg---GLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLE-DDKEMLEDLVAAA 76  Escherichia coli
P17577         1 MFGKg---GLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLE-DDKEMLEDLVAAA 76  Escherichia coli
P24281         2 RGGMg---NMQKMMKQMQKMQKDMAKAQEELAEKVVEGTAGGGMVTVKANGQKEILDVIIKEEVVDpEDIDMLQDLVLAA 78  Bacillus subtil...
P47380         2 SFKK-----IAEMMRQAER-ETKKKTLAFEQQAFEYNYKNGA--IKITILGDLTLKSINIDPVLIDaSDKVILEEMIIEA 73  Mycoplasma geni...
P75502         2 SFKK-----ITEMMRQAER-QSKQKALDFEQKLFEYSYKNAA--IKIIIFGNLTIKSITIDPALIDpEDKVTLEEMITEA 73  Mycoplasma pneu...
O24876         2 DFSQ-----LGGLLDGMKK---EFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE--DKEAMQIYLMSA 71  Helicobacter py...
WP_005691386  13 MFGKg---GLGSLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAA 88  Haemophilus inf...
P73057         8 GFGLgkikELQEAFQKAQQVQEGAKVLQEELERMEIPGKSADGLVTVLMSGNQEPLSIEIDPSALE-KGAEGLSASVTEA 86  Synechocystis s...
3F42_A         4 DFSQ-----LGGLLDGXKK---EFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLLE--DKEAXQIYLXSA 73  Helicobacter py...
WP_002557054   1 -----mavNPLDFLKNMSSVKNNIDNIKKEISKITVCGKAGSNIVTIEMDGEFNVKKVSINKEFFDdLDNDAFEQMIKSA 75  Lyme disease sp...
1PUG_A        77 FNDAARRIEETQKE---KMasvSSGMQLpPGF 105 Escherichia coli
P17577        77 FNDAARRIEETQKEkmaSV---SSGMQLpPGF 105 Escherichia coli
P24281        79 TNEALKKVDEITNEtmgQF---TKGMNM-PGL 106 Bacillus subtilis subsp. subtilis str. 168
P47380        74 TNEAVSDVKTKYDN---LV---EKTMPKvPGL 99  Mycoplasma genitalium G37
P75502        74 VNEAVGDVKAKYDQ---LM---EEAMPQmPGL 99  Mycoplasma pneumoniae M129
O24876        72 LNDGYKAVEENRKN---LA---FNMLGNfAKL 97  Helicobacter pylori 26695
WP_005691386  89 FNDAVRRAEELQKE---KMasvTAGMPLpPGM 117 Haemophilus influenzae
P73057        87 MKAAYAESTETMRSkmeEL---TSGLNL-PGM 114 Synechocystis sp. PCC 6803 substr. Kazusa
3F42_A        74 LNDGYKAVEENRKN---LA---FNXLGNfAKL 99  Helicobacter pylori
WP_002557054  76 LNDAVSKVKEEIKL---KT---MGVLPF--GM 99  Lyme disease spirochete
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