2FH9,1ZMU,3IEC,3ZGW,2Y94,1NVS,3UJG


Conserved Protein Domain Family
STKc_AMPK-like

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cd14003: STKc_AMPK-like 
Click on image for an interactive view with Cn3D
Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AMPK-like subfamily is composed of AMPK, MARK, BRSK, NUAK, MELK, SNRK, TSSK, and SIK, among others. LKB1 serves as a master upstream kinase that activates AMPK and most AMPK-like kinases. AMPK, also called SNF1 (sucrose non-fermenting1) in yeasts and SnRK1 (SNF1-related kinase1) in plants, is a heterotrimeric enzyme composed of a catalytic alpha subunit and two regulatory subunits, beta and gamma. It is a stress-activated kinase that serves as master regulator of glucose and lipid metabolism by monitoring carbon and energy supplies, via sensing the cell's AMP:ATP ratio. MARKs phosphorylate tau and related microtubule-associated proteins (MAPs), and regulates microtubule-based intracellular transport. They are involved in embryogenesis, epithelial cell polarization, cell signaling, and neuronal differentiation. BRSKs play important roles in establishing neuronal polarity. TSSK proteins are almost exclusively expressed postmeiotically in the testis and play important roles in spermatogenesis and/or spermiogenesis. The AMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270905
Aligned: 54 rows
Threshold Bit Score: 297.892
Created: 3-Jan-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3ZGW: Human MELK binds AMP-PNP; contacts at 4A.
  • Structure:2Y94: Rattus norvegicus AMPK binds the inhibitor, staurosporine; contacts at 4A.
  • Comment:also based on structures of other members of the CAMK family bound with ATP or ATP analogs or inhibitors
  • Citation:PMID 9362479

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ####    #            # #                               #               ##
2FH9_A         9 NYQIVktLGEGSFGKVKLAYHTttGQKVALKIINKkvlaksdmqgRIEREISYLRLLrHPHIIKLYDVIKskdeIIMVIE 88  baker's yeast
3ZGW_A        11 YYELHetIGTGGFAKVKLACHIltGEMVAIKIMDKntlg--sdlpRIKTEIEALKNLrHQHICQLYHVLEtankIFMVLE 88  human
AAZ94910      17 HYRVGklLGKGAFGKVSLGMHKatNQLVAIKSINKefleeersrkKVAREVAILKKLqHSNIINLYETFEtekhFLLVTE 96  Moneuplotes cra...
CAB61344       7 QYVMLetIGHGGCSKVMLARHRltGSHVAVKMIRKsec----wcnPVMSEVELLMMAdHPNIISLLQVIEtkkkVYLIME 82  house mouse
BAC26584      13 QYKVLftLGHGSFGTVKLACHLktKALVAIKMVELskk----nirGIRAEIATLEKLqHPNIICLFQVLVtskhINIVTE 88  house mouse
XP_001058976  35 DYYILgtVGEGSFAQVKVALHLitQTLVAIKILKRgtr----kdfLVISEIDLMTSLyHNHVIRLLQIIDtdrkTFLVME 110 Norway rat
CAH03360     139 EYEIQeiIGQGSYAIVRKGVHKinGQIVAIKVYSKerlydpqrarAVAKEIQILRQCnHKNIIHLIKVVEsnknINLIME 218 Paramecium tetr...
CAK81829     160 RYLILsiLGQGSYATVKLARDKftEKLIAIKIYSKaklcnqqrrqQLKREIHILKLLdHPNIIKYVNTIEtqmdINLVVE 239 Paramecium tetr...
EAY19939      18 NYRFMgpIGKGSFSVVKIVEDSvsGQLFAAKIIPKnklvasnlseRFETEIRIIRQLnHPGIVQLYDLFKdennYYIIME 97  Trichomonas vag...
XP_001316934  13 KYNFGqtIGKGSFSLVKMAMNTdtHEKLAIKIIPKsmistpeeklRFEREVNVIIKMnHPGIIKIHDFIIdanyFYLVMD 92  Trichomonas vag...
Feature 1        ##   #                                            ## #         ##               
2FH9_A        89 YAG-NELFDYIvqr--dkmSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDehLNVKIADFGLSNIMTDGnf--l 163 baker's yeast
3ZGW_A        89 YCPgGELFDYIisq--drlSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPENLLFDeyHKLKLIDFGLCAKPKGNkdyhl 166 human
AAZ94910      97 LCPgGDLLNYVrrr--rklTEETAKYFFKQLVEACIYCHKKGVVHRDIKLDNILLDqkGCLKLGDFGVSRAIKKNei--l 172 Moneuplotes cra...
CAB61344      83 LCEgKSLYQHIrna--gylQEDEARALFKQLLSAMNYCHNQGIVHRDLKPDNIMVEkdGKVKIIDFGLGTQVKPGqk--l 158 house mouse
BAC26584      89 YIPgGNLFDIIked--gpmHEEEARRIFGQVVSAVKYCHNQDIVHQDIKAQNILRDeeGNVKIIDFGLAIRCRSGtl--l 164 house mouse
XP_001058976 111 YAAqGSLRKLVnkr--gplGEEEARSIFRELCLAVNYIHSQNIAHRDIKAENVLLDweGHVKLSDFGLSKRLASGek--a 186 Norway rat
CAH03360     219 YGG-DQSLKKVkn-----lQEVEVQLIFFQILKAVNYLHNKKIVHRDIKLDNILLNaqKEIKLIDFGFATEIDGYi---- 288 Paramecium tetr...
CAK81829     240 YGGsKSLRSYLkqfpnrrlDEGDAKLLFRQIVKAVDYCHSLNIVHRDIKLENILLKdnNEIKLIDFGFSVLVNRDck--l 317 Paramecium tetr...
EAY19939      98 LCSnGELYEQIien--erlSEIEAKYYMKQILEALCYVHNLGICHRDIKPENILLDeqGHAKISDFGLSRFVTAVgl--a 173 Trichomonas vag...
XP_001316934  93 YCSgGTLLSQVgin---klTEDAAKPLFKQILETVHYIHSQGIAHRDLKLENIMLDefGHIKIIDFGFSRFVEKGem--f 167 Trichomonas vag...
Feature 1                                                                                        
2FH9_A       164 KTSCGSPNYAAPEVISgklyaGPEVDVWSCGVILYVMLCRRLPFddesipvlfknisngvytlpkflsPGAAGLIKRMLI 243 baker's yeast
3ZGW_A       167 QTCCGSLAYAAPELIQgksylGSEADVWSMGILLYVLMCGFLPFdddnvmalykkimrgkydvpkwlsPSSILLLQQMLQ 246 human
AAZ94910     173 KDQCGTPAYIAPEVLHnrgynGKLSDTWSCGVVLFAMLYGTVPFkgtnmdelhslikngqyslkdsvsKEGRKLIKGILE 252 Moneuplotes cra...
CAB61344     159 NLFCGTYPFSAPEVLLsrpydGPKIDVWTLGVVLYFMVTGKVPFdaasiqklvrqilagkyfvpsrlsVELRDLISLLMT 238 house mouse
BAC26584     165 KRQCGTKSCFAPELVLqepydGKKADVWSLGVLLYFITTGYYPFrgstmkemeekiatgtydipthvsGQLENLIHQILT 244 house mouse
XP_001058976 187 KGFCGTAQYCAPEVFGhtqydMLPADIWSMGILLYYLVLGKLPYkgtvhskiryqilsrscwipyhlsPQLRNLLKRLMT 266 Norway rat
CAH03360     289 NTTYGTPSYMSPEMLPpnpryNEMTDIWSCGVVLYALLFNKFPFsghtekelqmki-kkqdlhvysidEEILEVLLNCLE 367 Paramecium tetr...
CAK81829     318 GVFCGTPSYMAPELVNkqdyfGKPVDVWALGVLLYVLLTGHFPFkgsndadlygqi-kkgvylkanvsSQCQKLISQMLT 396 Paramecium tetr...
EAY19939     174 ETPCGSPCYASPECIRggsydGRKSDMWSCGVLCFAMLTGQLPWtkrnqsqlfdqiqkadysipsyvsELGKRFIRGLMD 253 Trichomonas vag...
XP_001316934 168 MTPCGSPAYAPPEVIDgekydGKLADLWSLGVILFALVTGELPWkgtnqiqiynqirnaqfdippqvsKFAQDLINQLLR 247 Trichomonas vag...
Feature 1                         
2FH9_A       244 vnPLNRISIHEIMQDDW 260 baker's yeast
3ZGW_A       247 vdPKKRISMKNLLNHPW 263 human
AAZ94910     253 inPKKRLTLKEILETPW 269 Moneuplotes crassus
CAB61344     239 anPKLRPTVAEVMVHPW 255 house mouse
BAC26584     245 vpPEMRPSIEDIERHPW 261 house mouse
XP_001058976 267 idPTMRPSTTEILAHPW 283 Norway rat
CAH03360     368 rdVDRRKTADQLLKTLW 384 Paramecium tetraurelia
CAK81829     397 irPSERITTLRILQDRW 413 Paramecium tetraurelia
EAY19939     254 pnPETRLNVEQALSHPW 270 Trichomonas vaginalis G3
XP_001316934 248 idPTTRLTTTEILTHPW 264 Trichomonas vaginalis G3

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