Conserved Protein Domain Family
PBP2_ModA_like_2

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cd13541: PBP2_ModA_like_2 
Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold.
This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270259
Aligned: 13 rows
Threshold Bit Score: 332.733
Created: 11-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the molybdate transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ##                           #                  #                         
ACM29928       7 PLSILSAGsmrYAFPAIIAAFgelndVPISLTLGpAGLLRERIEAgaYFDLFASAnMAHPRHLAAqgitdDAVCFARNRL 86  Agrobacterium r...
P57911         1 MRILAAGSl-rQPFTLWQQALiqqyqLQVEIEFGpAGLLCQRIEQgeKVDLFASAnDVHPRSLQAryphiQLVPFATNRL 79  Pasteurella mul...
NP_719497     15 PIELRAAGslkAAMNDIIAAYqvksqANVVAQYApSGLLLKRIQEgeRVDIFASAnMKHPQALVDagageKVQMFARNQL 94  Shewanella onei...
YP_317496     32 TLRVFAAGstrGVLAAIADDYtkatgQRFELTFGpAGLLLNRIQKegGADVYVSAnMEHPQRLYEkgagtPPVIFARNRL 111 Nitrobacter win...
YP_001100069  32 LPLLVAAGslkTAMDETIAAYqaqggSAFQTKYGpSGKLRKEIETsaKVDVFASAdIEHTNALAQkklldVSRVFTHNDL 111 Herminiimonas a...
EGK72466      21 GASVHAAGslkAVFTQLGKLYaeqggAAPRFEFGpSGVLRDKIAGgaKADLFASAnMSHPQTFVDagkaaKVERFARNEL 100 Methyloversatil...
ACB94510      41 PLRVYAASslgGALKSVATRYenetgEKIDIFLGpAGLLLEKIENggDAELFLSAnMKHPAQLARegrglPPVVFTRNAM 120 Beijerinckia in...
ACX87226       4 PLHLYAAGslrLAFAPLLTTFseryaVEVIPTFGpAGLLSEKVLHgdAADIFASAnCAHPLRLKAlglaeETSVFTRNHL 83  Pectobacterium ...
ABA23630      21 SVRLYAASslkAVLSEIAQAFtrkykIPIKLEFDdAELLRERLLAgeRADIFAADdLQNPSALMQanqssPVVNFTSNRI 100 Anabaena variab...
EFM55027       1 MRVLAAGSl-rRVWKSLVSEYq---aDNIQCDFGpAGILRERIEAgeACDFFASAnMTHPQILMSagralCIKPFASNRL 76  Escherichia col...
BAI76256      30 ELVLYGAGslrDAMTAIAADYgkatgTSVRTAFGpSGLMRDRIEAgeAVDLFTSAdMGHALTLRKdgraaAVVMFTRNRL 109 Azospirillum sp...
EGC72408       3 KLTIYSAGsfrYALLELTRAFkqcheVEIECILGpAGLLKTRIIQgaLADLFISAnSENVSALGRrv--fQQQVLTYNQL 80  Haemophilus par...
YP_001477607   3 NILLFAAGslrGALGPLLAAFkvqtgAAVETVFGpAGLLRQRIETgeRPHIFASAnLAHPQRLVDlrlssQVQLFARNRL 82  Serratia protea...
Feature 1                                           ##                                           
ACM29928      87 CVLARSdlglttanl-lgvitdpriKIGTSTpgddPAGDYAFEVFDLIeakhsglgkplksRARQLVGgr--nSPPTP-- 161 Agrobacterium r...
P57911        80 CLITKKsvithhdenwltllmsphlRLGVSTpkadPCGDYTLALFSNIekrhmgygsklkeKAMAIVGgp-dsITIPT-- 156 Pasteurella mul...
NP_719497     95 CAIAQAdvpltsanl-ldtllapqtKLGTSTpkadPAGDYAWAVFAKAeaiktnaksileaKALQLTGgp-esAKPPK-- 170 Shewanella onei...
YP_317496    112 CVTGRAelgltqdtv-ldklldpsiKIGTSTpgadPGGDYALQFFDRAetvragakealikNARQLVGgp-tsPKVPA-- 187 Nitrobacter win...
YP_001100069 112 CVVARPelklhvdnm-ldvlrspsvRVATSTpvsdPMGDYTWQFFRNAesrqpgiyqlldaKALKLSGa---sVPAPG-- 185 Herminiimonas a...
EGK72466     101 CLLVRPglavtpgna-ldhmlrrdlKLGMSTpkadPSGDYAVQMFERAdalrpgagrallaRGRTLTGaa-dsPKPPG-- 176 Methyloversatil...
ACB94510     121 CVLAKPgfgltsdnl-ldklldpatRIGTSTphadPGGDYAWALFAKAeyvhpgaqkiledKAQKLVGge-ilPQPGSqp 198 Beijerinckia in...
ACX87226      84 CIVMRNvpelttqsw-lmalldprfVLSTSTpgsdPGGDYALQLFDRIerlhrgwgnqlrdKAKPLVGgg-ldHAIPA-- 159 Pectobacterium ...
ABA23630     101 CAIAKPgiiinsdtl-ldlmlsseiRLGTSTphpnLFEDYTQAVFHKAeklragsfdklnsKALRLGNgs-nyPIISE-- 176 Anabaena variab...
EFM55027      77 CLYVRAnkfnenddw-ysllnretlRIGTSTagcdPSGDYTQELFENMgsvge----kirqRAVALVGgr-hsLPLPG-- 148 Escherichia col...
BAI76256     110 CAYAKPdarlepavf-aerlldpavRIGTSTpkadPGGDYTWEMFQRIerrhpgafaildaKAKKIVGns--tAADPA-- 184 Azospirillum sp...
EGC72408      81 MLTTKNkpefqrdtl--ellfddqyRLATSTpvcdPCGDYAWQLFDLIekdypeqgkrlksKALKLVGgtenqVVIPP-- 156 Haemophilus par...
YP_001477607  83 CATVRNiagltdrpl-levlrdsrwRVATSTpgadPSGDYAQQLFERIdllapgqgvalqqRALALVGgp-dsVPLPP-- 158 Serratia protea...
Feature 1            ##                  #                                                       
ACM29928     162 ----PGKGAGWLITDGe-VDLFLSYYSNARllks------dpaFSVVALPeefspIIECGVTIRKga-----cAEAAELR 225 Agrobacterium r...
P57911       157 ----GRNTAEWLFEQNy-ADLFIGYASNHQslrq------hsdICVLDIPdeynvRANYTLAAFTa-------EALRLVD 218 Pasteurella mul...
NP_719497    171 ----DRNPYGWVMENKq-ADVFLTYCTNAVlaqk-----evpsLKIVALPpelavGADYGLLVLKda-----nSATTALA 235 Shewanella onei...
YP_317496    188 ----GETAIHYFFSRHe-ADVFIGYCSSHTnigagtkkpsdvpITRVEVPqplaiPINYGLTIPAtsenedrmESAYRFA 262 Nitrobacter win...
YP_001100069 186 ----EKLPYITAFEDDk-ADAYIMYCTNAVitkk-----avpqLHVVRIAdelnvRSVYGIAAGLh------sAAGKDFV 249 Herminiimonas a...
EGK72466     177 ----GRNAYAWVVDSGq-ADLFVTYCTNVRlakq-----evpaLQEVALPpelsvGADYGLVVLSga-----gSEGERFA 241 Methyloversatil...
ACB94510     199 ganqGGSPVKHFLTDGt-VDTFIGYCSRREakp-------dpdFSAVRTPenltiAVDYGLTPLSappp-erqLAAQRFA 269 Beijerinckia in...
ACX87226     160 ----GMTAGSYLIRNGq-SDMHIGYASYLPllln------qpdLHVVHLPdpyriDAEYMLAIMKpv-----rREARLLA 223 Pectobacterium ...
ABA23630     177 ----RRNKFVYFILETqqVDIFLSYYTDARlahl-----eapdLQIINLPknlcfYVNYGMTIINks-----hSAAVMLA 242 Anabaena variab...
EFM55027     149 ----NAIAAQWLIENDy-TDLFIGYANYVPglqs------idsVKVIEIPepynpIAIYGFACLT--------DKALPLA 209 Escherichia col...
BAI76256     185 ----DPDPIASAFARGd-ITVMIAYCSGAEqrrr-----atpdLQVVPVPppyatGPEYGLAITSlq-----kPAAVGLM 249 Azospirillum sp...
EGC72408     157 ----GEMASHYLLKNDy-ADMMLGYAHYQTrle-------nlgMLCHALPseydiCAEYVLAMLNd------aALTQRFY 218 Haemophilus par...
YP_001477607 159 ----HRLAAEYLLNSGq-ADIFLGYASYGAalag------ypeLLVRQLPtpltiEADYGLCLLD--------ARAQPLA 219 Serratia protea...
Feature 1                          
ACM29928     226 DFLLSsnGQRILERNGFE 243 Agrobacterium radiobacter K84
P57911       219 SLLCLtcGQKYLRDCGFL 236 Pasteurella multocida subsp. multocida str. Pm70
NP_719497    236 EFILSpeGQAILTGYGFQ 253 Shewanella oneidensis MR-1
YP_317496    263 LYLMSpdAQRRLPEYGFL 280 Nitrobacter winogradskyi Nb-255
YP_001100069 250 RFVMGstGQAILKKHGFE 267 Herminiimonas arsenicoxydans
EGK72466     242 RFLLSapARAVLAADGFA 259 Methyloversatilis universalis FAM5
ACB94510     270 LYLLTpkAQAILADYGFT 287 Beijerinckia indica subsp. indica ATCC 9039
ACX87226     224 NYLLSpeGQGFLVNKGFA 241 Pectobacterium wasabiae WPP163
ABA23630     243 MYILSqdGQEILAKYGFF 260 Anabaena variabilis ATCC 29413
EFM55027     210 DFLVSpvARGILEQHGFM 227 Escherichia coli NC101
BAI76256     250 LAILSpeGQATLARFGFD 267 Azospirillum sp. B510
EGC72408     219 QFLLSehAQDIIRKNGFK 236 Haemophilus parainfluenzae ATCC 33392
YP_001477607 220 EFILAeqGQGILREQGFL 237 Serratia proteamaculans 568

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