1YB1


Conserved Protein Domain Family
17beta-HSDXI-like_SDR_c

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cd05339: 17beta-HSDXI-like_SDR_c 
Click on image for an interactive view with Cn3D
human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-Adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.
Statistics
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PSSM-Id: 187598
Aligned: 26 rows
Threshold Bit Score: 238.296
Created: 29-Jan-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1YB1_A        33 IVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINk---hGLEETAAKCkglg-akvHTFVVDCSNREDIYSSAKKVKA--E 105 human
XP_001030752 576 NVLLTGAAMGAGKFLAMNFAKKNNcNIIIYDIRedlmgQVIEEIQKAga----kgYFYKCDVSDEQELQRTVESTLQ--K 649 Tetrahymena the...
XP_762083     60 VAVVTGGSGGIGMEVVQRLSARGV-KVAILDLVe---pKGGILSNTV--------RFYKADMTDYDSIAAAAKNVEK--D 125 Ustilago maydis...
EAT78158      79 IAVVTGGAQGIGACVVKNLLSHGI-SCAVLDVAp---lSANYTKHELnl-----vRYYKCDITSPHDLHSAAEAIRS--D 147 Phaeosphaeria n...
NP_010169     40 TALITGGSSGLGFELAKELSRRIN-KVIVADIQsf-ptFAQVEYNNI--------FYYQCDITSLDEIKNLKKAIER--D 107 baker's yeast
XP_759273    116 VVVITGGSQGIGKEIVQLLSHKKHaSIAVLDMAppayvKAPAGAPEI--------VYFKTDVSNREQVGEVGAKIRAafP 187 Ustilago maydis...
XP_370041     47 IIVVTGGSGGIGAETVKKLAGRGS-QIVVLDVLp----LSYSNVPNV--------HYYECDLTKYDELQEVGKRISK--E 111 Magnaporthe gri...
BAE61191      41 VVLVTGGLSGLGREIAELYRVQGA-KVAILDIKde--aSLPWVPNTMa------sKYYKCDVSDGSEVEATLKKIGV--A 109 Aspergillus oryzae
EAU84355      93 IVVITGGASGIGELLANTLAVRNV-TVVVLDVN-----PIVTENYNI--------TYYKCDVSKWEEVEAAAKTIRE--E 156 Coprinopsis cin...
YP_861007      8 TVLITGGASGIGLLLTKFSIEKGAsALIILDIDk----PALQQVELQlktnicqiLSFETDLSNEIQIENAVKKITA--Q 81  Gramella forset...
Feature 1                                          #                            #            #   
1YB1_A       106 IGDVSILVNNAGVVYTSDLF-ATQDPQIEKTFEVNVLAHFWTTKAFLPAMTK-NNHGHIVTVASAAGHvsvpfLLAYCSS 183 human
XP_001030752 650 FQKIDILINNVGIANLKLFT-DVSFDEVQKAFSVNFLAPVSIIKKILPVMIE-RNQGHIVNVSSVASLmpsakMTDYCAS 727 Tetrahymena the...
XP_762083    126 LGAVTILVNNAGVANDGPSIlEFDPKKTKLTIEVNLLSHFYTLKVFLPHMIR-TNHGHIMSVASAGSFimpagGADYGAT 204 Ustilago maydis...
EAT78158     148 LGHTSILINNAGIGNAYTIL-DIPLENLKKIFDINLLSHWSTVKEFLPDMLA-KKKGHIMSVASLASFvslaaAVDYSCT 225 Phaeosphaeria n...
NP_010169    108 HGNINIIINNAGVAHIKKLE-HMTNKEVEQLIDINLIGAYRIISTFAEDMID-NREGFIINIASVLGEltparLTSYGAS 185 baker's yeast
XP_759273    188 GKKIGVLINCAGVASGNTIL-DVDLESAARLWRINTLANWITAKEFAPDLIA-RNHGHVVTVSSAGAYatlpsMSEYATS 265 Ustilago maydis...
XP_370041    112 IGDPTVVIANAGICRGKPIL-SASKRDIELTFGVNNIALLFTAKTFLPSMVA-KNHGHFLIIASQTGYiatpgLTDYSAS 189 Magnaporthe gri...
BAE61191     110 LGNPDILINCAAMPINRLPFcELQSESFARTIRTNLLGPVNLTRAVLPLLMQsTKRGSIVNISSVVAHlypagLSDYVSS 189 Aspergillus oryzae
EAU84355     157 IGDPTILINNAGVVQGKLLL-DLTPEDVNQTFGVNTLAHFWTTKAFLPSMIE-NKQGHIVTISSVMGIvgaaqMTDYCAS 234 Coprinopsis cin...
YP_861007     82 NLQVDILINNAGVVTGKNFS-EHNLEDIDRNMQVNAIAPMKLTKLLLPEMLK-RKSGHIVNISSAASMlsnpgMSVYCAS 159 Gramella forset...
Feature 1        #                                                                               
1YB1_A       184 KFAAVGFHKTLTDELaa----lqITGVKTTCLCPNFVNTGFIKNPSTSl-------gPTLEPEEVVNRLMHGILTE--QK 250 human
XP_001030752 728 KAALSGFHNALRLELkq-----qKKNINTTLICPYAVNTGVLQGLETKlks----lfPILDENYVADEIYNAILEQ--RE 796 Tetrahymena the...
XP_762083    205 KAALVSLHETLQLELell--yqnRTGVLCSIVHPYWIATPMTEAIFVPkf-----hkKMIKPEVVGSKMVDQLLSGq-GG 276 Ustilago maydis...
EAT78158     226 KAALLAFHEGLGQELkhr---ykCPQIKTTIVHPSWTKSAITAHPAIQagle-sigvKLLEAEHVAEAMGRQIIAArsGQ 301 Phaeosphaeria n...
NP_010169    186 KGAMIGFHKCMSRHFrslstecnKTGIKTLLVCPGKIKTNMFIDVPTPskl----laPDIIPSQLALAIISAMEHNh-LQ 260 baker's yeast
XP_759273    266 KAAALAFHECLAIEFrtr---ynAPRVRTTLVAPTKVRTALGDGMEDHadp---fftPVLEPVQVAEKVVWSLDSGl-SQ 338 Ustilago maydis...
XP_370041    190 KAATIAIYEGLHAEVglm---ygAPSVRVSCVSPTLVDTKMFQGMDSSaa-----pgGALRPEDLGARIAGIIHSGr-AQ 260 Magnaporthe gri...
BAE61191     190 KAALSALHHCLEAEArwf---gyDKQVDFFLVEVGQMDTPLFSWIKPPnsl----laPVLEPRYVAEKVFAAVSSGg-GR 261 Aspergillus oryzae
EAU84355     235 KAALVSFNESLRYELdhr---ynCPKIRTTLVCPGVIQTPMFQTVKLPssflwkflfPPLQPVTVVKRIIAALDEQh-SQ 310 Coprinopsis cin...
YP_861007    160 KWAMTGWSDSLRLEMer-----eRTGIKVLTVTPYYIDTGMFEGVKSPv-------iPILKPEKVAWKIIRSIDKN--KI 225 Gramella forset...
Feature 1                              
1YB1_A       251 MIFIPSSIAFLttLERILPEGS 272 human
XP_001030752 797 EVFIPQSWKQGalFLRALPTAV 818 Tetrahymena thermophila SB210
XP_762083    277 SLYVPGWIGRLa-WIRVLPHWM 297 Ustilago maydis 521
EAT78158     302 LILGPRISPKIr-ALPTWLQEV 322 Phaeosphaeria nodorum SN15
NP_010169    261 TLNAPYYVNLVp-FFKTLSWPY 281 baker's yeast
XP_759273    339 HLLLPGFANLLp-WIRALPDWF 359 Ustilago maydis 521
XP_370041    261 HACVPHWSVSPlsFIRTWPDWL 282 Magnaporthe grisea 70-15
BAE61191     262 IIRLPKYAAWVc-GYDMLPVPV 282 Aspergillus oryzae
EAU84355     311 SIYLPFYTNFSp-YVALLPSFL 331 Coprinopsis cinerea okayama7#130
YP_861007    226 VLRTPKIIYTLplMQGLFPKRL 247 Gramella forsetii KT0803

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