Conserved Protein Domain Family
UDPK_IM_like

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cd14265: UDPK_IM_like 
Integral membrane undecaprenol kinase and similar enzymes
This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of undecaprenol to undecaprenyl phosphate. C55-isoprenyl (undecaprenyl) pyroposphate acts as a scaffold for the assembly of peptidoglycan components; undecaprenol kinase (UDPK) is involved in recycling undecaprenyl units for re-use in the peptidoglycan biosynthesis. UDPK does not participate in the de-novo biosynthesis of undecaprenyl phosphate. Gram-positive bacteria have a large pool of free undecaprenol, in contrast to gram-negative bacteria. UDPK may also play a role in a stress-induced pathway that affects the function of ribosomes. In Streptococcus mutans, UDPK has been shown to be required for biofilm formation, such as in the case of smooth surface dental caries. Members of the UDPK family have low activity as diacylglycerol kinases (DAGK), and many of them are annotated as DAGKs.
Statistics
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PSSM-Id: 260134
Aligned: 330 rows
Threshold Bit Score: 51.6165
Created: 30-May-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding sitetrimerputative active
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #                                               #              
YP_007911460  13 YKSFSFAIQGIIHAFKhERNLKIHFVAALLVILLGCWLqltTTEWLFVLLAIGGVITLELLNTAVERLVDLVTkedHPLA 92  Bacillus sp. 1N...
YP_003120119  11 IRSFKYAIQGIIAFLRsEPHARIHAVATVLVIAAGFYYrlsASQWLPILIVIGMVWVTEMLNTVVEKIMDHLSpdyHPRV 90  Chitinophaga pi...
WP_009814332  61 ARSFGFAAHGIKLVLRrEHSAWLHLGAAALAIGLGFILqidLAAWRWIILCIGLVIAAEILNTAVETTCNAITtapHPLI 140 Roseovarius nub...
YP_002892213  16 VQSIRHAVRGVTEMLKsEHNAWVHLFATVCVVLAAAVLsvnAIEWCFLILAIMAVWVSEALNTAFEFLCDVASpdfHPLV 95  Tolumonas auens...
WP_009958956   5 FPVLRHAWHGLVHVVRtQRHALWHALASLAVVGLGIGLqvsLIEWLALILAIGLVWVAEIFNTALEIACDVITkepHPLI 84  Verrucomicrobiu...
YP_004086437  10 VKSFVYAFAGIGFMLRtQHNAWLHAIASVGVVGVGLWLkvtPADWRWLIVAMAMVWVAETFNTAIEYVCDVVSpgySESV 89  Asticcacaulis e...
YP_005011294  13 VRSFRYALEGIAAFFQsEHNAWLHFMATVAVITLATLVgvtKTEMLALVFAIGFVWVAEMFNTCIEKVMDFVSdqrHKDI 92  Niastella koree...
YP_003368666   9 FRKFASAMRGIGIAIGgERSFYVHLPVAALMLLLSFWVrmpFSYMVWIIAAIGAVFTAEIFNTAIERLARRVSlkdDPEI 88  Pirellula stale...
WP_010047017  23 RDKFREAVRGVKCGARgQSSFSVHFFCAVVALTAAAVLecdHWEWCLIIGCIGLVTTAELINSSIELLFQGLEqevRDRV 102 Gemmata obscuri...
YP_007202964  43 REKFAAGLRGLKHAIRgDSSFFAHGYRGILIAMTATLLgvsPWAWCLLVIAACMVLLSELTHSAIDTLARAVGdpeAPPF 122 Singulisphaera ...
Feature 1                                  
YP_007911460  93 KQAKDIAAGAVLVYAILSVLIGLIIF 118 Bacillus sp. 1NLA3E
YP_003120119  91 KWIKDVAAGAVLVAALIAAITGAVIF 116 Chitinophaga pinensis DSM 2588
WP_009814332 141 GRAKDMAAGAVLLCALTALILGALTF 166 Roseovarius nubinhibens
YP_002892213  96 KKSKDVAAGAVLLSAIGAVIIALIIF 121 Tolumonas auensis DSM 9187
WP_009958956  85 GLAKDVAAGAVLVAAFIAAAVGAVVF 110 Verrucomicrobium spinosum
YP_004086437  90 KRAKDIAAGAVLLCAFAAVLTGGFTL 115 Asticcacaulis excentricus CB 48
YP_005011294  93 KFIKDLAAGAVLVAAITALVVGAVVF 118 Niastella koreensis GR20-10
YP_003368666  89 ADVCDIASGAVLVTAITAVVIGVLIL 114 Pirellula staleyi DSM 6068
WP_010047017 103 CPCLETAAGAVLVATLTALAVGGIIF 128 Gemmata obscuriglobus
YP_007202964 123 RMAREIAAACVLVAAFGSGAVTVVVL 148 Singulisphaera acidiphila DSM 18658

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