Conserved Protein Domain Family
DUF3456

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pfam11938: DUF3456 
TLR4 regulator and MIR-interacting MSAP
This family of proteins, found from plants to humans, is PRAT4 (A and B), a Protein Associated with Toll-like receptor 4. The Toll family of receptors - TLRs - plays an essential role in innate recognition of microbial products, the first line of defence against bacterial infection. PRAT4A influences the subcellular distribution and the strength of TLR responses and alters the relative activity of each TLR. PRAT4B regulates TLR4 trafficking to the cell surface and the extent of its expression there. TLR4 recognizes lipopolysaccharide (LPS), one of the most immuno-stimulatory glycolipids constituting the outer membrane of the Gram-negative bacteria. This family has also been described as a SAP-like MIR-interacting protein family.
Statistics
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PSSM-Id: 463404
Aligned: 67 rows
Threshold Bit Score: 75.0564
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4Q576        60 DCSACITVARTLFERLNQTlAENPSTYLISHRLGkKNQ--LRRRQYRNSELLVTEVMENVCtSYKNDaRLLRLHPKSKVR 137 Leishmania major
XP_007666049  36 FCGACKALMDEIEYDVMKA-RQKKTMVVGSFRINpDGTqqRKKISLAKSEAFLTEVLENVC-NRMND-YKLEEDPQTKEK 112
XP_002715069  35 VCGACRALMDEVEYDVTKA-RQKKAK-VGSFRINpDGTqeRRKIPLVQSEAFLVDLLDNVC-ERMND-YQLKEDPVTKEK 110
XP_030828566  34 YCGACQALISEVEYAITQE-DPHQTITVGSFRIDpKGEqkQKKIPYAGSELHLTEVMETVC-DKMTD-YAEKTDPETNEK 110
XP_002602980  28 YCGACHVLVDEIDYAIRQI-DPRKTIQVGSFRVDpKGNqkTWEIPYARSEVYLTELVETVC-EKMNQ-YAQSTDPDTQKK 104
EKC42608      25 YCAVCRALVDEVNHSISLV-DSKQKVQVGSFRVDsKGNqkVVEVPLARSEIHLTEVFETIC-EKFRQ-YGNTKN-ELGKK 100
XP_006165671  27 HCGACRALVDELEWEIAQV-DPKKTIQMGSFRINpDGSqsVVEVPYARSEAHLTELLEEVC-DRMKE-YGEQIDPSTHRK 103
CAF96536      31 KCGACRALVDEMEWAISQV-DPKKMIQTGSFRINpDGSqsIREVPLARSEGHLLELMEGVC-ERMED-YGELADASTHRK 107
Q28FU2        31 HCGACRALVDELEWEISQV-DPKKTIQKGSFRINpDGTqsVIEVPYARSEAHLMEVLEQIC-EKMTE-YGEKIDPSTDRK 107 tropical clawed...
XP_005061446  44 HCGACRALVDELEWEIAQV-DPRKTIQMGSFRINpDGSqsVVAVPYARSEAHLTELLERVC-EKMKE-YGEKVDPATHRK 120
Q4Q576       138 lyhqqvfGDTRLGVRhalREDEVYPaDADPAAWAEKlDGQlypiarlySRRDADalqglqslsatptmCALLVEEFEDEI 217 Leishmania major
XP_007666049 113 -------SFKRFAPR---KGDKI---YEEFKRFYFY-SDAy-------KPLKFA--------------CETIIEEYEDEI 157
XP_002715069 111 -------TFTRYAPR---KGDKV---YKEYKKFYFY-SDAy-------RPLKFA--------------CETIIEEYEDEI 155
XP_030828566 111 -------TYVRYQAR---NGEDM-----ELINVSIN-LTTg-------KVLKVA--------------CENIIEDYEDDV 153
XP_002602980 105 -------SYVRTSSR---NGETL-----SLSNISMN-QDIs-------KALRFA--------------CESIIEDFEDDM 147
EKC42608     101 -------SVVRMVSR---DGKPL-----VLKDIHIT-MEGm-------KLLTHT--------------CETIAEEYEDQI 143
XP_006165671 104 -------NYVRVVSR---NGDSN---ELDLQGIRID-SDIs-------GTLKFA--------------CESIVEEYEDEL 148
CAF96536     108 -------SYIRVRSR---GGEAMDLsQATLD------SRVt-------ASLKFA--------------CETIVEQHEDEI 150
Q28FU2       108 -------IYVRVVSR---DGKKMDAsGTNID------IEVt-------SNLKFT--------------CERIVEEYEDEL 150 tropical clawed...
XP_005061446 121 -------SYVRVISH---DGTKMDLsGLKFD------GDVt-------SSLKFA--------------CESIAEEYEDEL 163
Q4Q576       218 ESLVKSVRSL-EETEHSLCG--MTLP 240 Leishmania major
XP_007666049 158 YALIAQ---EaVYLADKLCSekSDLC 180
XP_002715069 156 FALIAQ---EaRSLADRLCSekSGLC 178
XP_030828566 154 LRLYRE---KsTDIETSLCSslTKLC 176
XP_002602980 148 VKLFSKEGPKlHELQNSLCMetAELC 173
EKC42608     144 IRAFRDGELA--AVEQKVCGniAGYC 167
XP_006165671 149 IEFFSR---EaDNVKDKLCSkrTDLC 171
CAF96536     151 IEFFAH---EtDNVKDKLCSkrTDLC 173
Q28FU2       151 IEFFSH---ErENVKDKLCSkrTDLC 173 tropical clawed frog
XP_005061446 164 IEFLSH---EaENVKDRLCSkrTDLC 186
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