Conserved Protein Domain Family
PDDEXK_2

?
pfam12784: PDDEXK_2 
PD-(D/E)XK nuclease family transposase
Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.
Statistics
?
PSSM-Id: 432783
Aligned: 19 rows
Threshold Bit Score: 197.501
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q24RR6        15 KIDYAFKLIFGKE-GNEAILIAFLNAALKlPQERRIEAITIMNPELNKEYQGDKKSILDVRAETSEGMQINIEIQLSNQY 93  Desulfitobacter...
Q73J06        11 KTDWVFKLMFSKGeEGNKALISFLNAFLE-DSYGKINKAEIINTELIRDRPSGETYRLDFLIKTDNGLIIDLEMQQFWKT 89  Treponema denti...
Q2FSM1        22 KNDYVFRYLLGEE-GNEELLTSLISAILG----RRITHATIKNPYILKLYYDTKECILDIKAEIDENILVDIEMQLCNSP 96  Methanospirillu...
Q73QP0        10 RNDYAFKRVFGVE-ENKDVLQDLLECILD-IQPEDIAGLELLDKEFHKDSISDKTGVLDVKLRLKNNTIIDIEIQNRWNS 87  Treponema denti...
Q73N12        10 RNDYAFKRVFGVE-ENKDVLQDLLECILD-IPPETIAGLELLDKEFHKELLSEKLGILDIKLRLKDGTFVDIEIQNSWHF 87  Treponema denti...
Q73K05        12 RNDYAFKRIFGTE-ENTDILQDLLECILD-ILPENIAGLELLDKEFHKEILTEKLGILDIKLRLKDKTIINIEIQNRWRG 89  Treponema denti...
Q8XNB3         9 QIDFVFKKIFGTE-KNKPILINFLNAVIK--PTTPIKDVEIKNNDIDKDFLEDKFSRLDVKATTSNKEHINIEIQVKNEY 85  Clostridium per...
Q24PT3         8 INDYLFKWVFGRP-ENKEILLSFLNSVLSpNGQDELADITLAERELDPEHIHDKLSRLDILGKGNDGSIINIEVQIANQY 86  Desulfitobacter...
WP_012508639   7 RVDFAFKKLFGSE-ENKDLLISLINAIVS--EEDQVVEIELKNPYNLADYRAGKISILDIKAKAENGRWFNVEMQISEDY 83  Pelodictyon pha...
WP_015807586  26 FVDFSFKRLFATE-ESKPILIGLLNHLFK-GRK-YITEIEYGKNEFPGEIAQEGGAVFDVYCTDVNGSKFIIEVQRGNQE 102 Pedobacter hepa...
Q24RR6        94 DMEKRSLYYWAEMYSRQIRegMAYK---ELAKAVTINILD-FNYLKQt-sNYHNVFHLYEDeekf--qltDALEMHFMEL 166 Desulfitobacter...
Q73J06        90 NYHRRSQMYLMRLASRFLK--TEPK---EDDFLYAISLSV-FGCDVP---KNAELVRMSES---------SIIQYLYVEL 151 Treponema denti...
Q2FSM1        97 ELINRILLYWSRLYASQMKagDGYH---VLKKTISILILDdDPYHTD---DFHVCSRIINCvqkf--eltDLLEIHILEL 168 Methanospirillu...
Q73QP0        88 EFVQRTIFYWAKMYTENLKtgEVYT---KLPKCITINIVG-EGFDLNs--LIHSEYNVVEKhlnd--rlsDELEIHFLNL 159 Treponema denti...
Q73N12        88 DFPERTLYYWSKMYNENIKqgQDYT---KLPKCITINLIG-KDFDKNk--RLHNKYLVLEKdtke--plvSKLEIHILNL 159 Treponema denti...
Q73K05        90 DFPERSVYYWSKMYNESIKqgQDYT---NLPKCITINLIG-KGFNKNk--RLHNKYFVMEKdtke--plfSKLEIHIINL 161 Treponema denti...
Q8XNB3        86 NMIQRTLYYWSKMYSEQIQnrDNYS---KLERTVCINILN-FKYLKNd--KYHNAYRLKEItsne--eltDLQEIHFIEL 157 Clostridium per...
Q24PT3        87 DIDKRTLYYWAKLYQGQLQkgQRYK---DLSRTITVNVLN-FGFLPDs-qKYHSMFSLYEAhsgy--rlnRDLEIHFLEL 159 Desulfitobacter...
WP_012508639  84 NFDKRAIFYWAKLVTEQLSegMMYK---ELKKTISINILD-YNFVPDt-tDVHSCYKIINTatgkddrlhDVFELHYIEL 158 Pelodictyon pha...
WP_015807586 103 YFKERALFYVSRAISEQAPkgDRKGwayKLTEVYLLAFLEdFNLPDSpksEYVQDICLANRhtgi--ifyDKVGFIFIEM 180 Pedobacter hepa...
Q24RR6       167 PKLLAKWRNREISpw-enELVRWLLLLEGADNQEILQTLEeiamKDPVLHQAMTAWEETSDDPRIREAYFDRRKAvldeK 245 Desulfitobacter...
Q73J06       152 NELIVYTMKKRLEey--sLKDFWIRFLANYEEDKKSGMLEelckLEEGIKMAEATLFRVTDEERRMAIELSDEKY----R 225 Treponema denti...
Q2FSM1       169 PKVHKRREQDTND-----KLIPWMNFLYAQTREELDMASE----ANPVIRKATDMLTAMSRDEEERLRYEAREEFlfdqQ 239 Methanospirillu...
Q73QP0       160 AKVKEQDENIESDek-kkKLYNWLKFIETDDEEVRNMLAQ----ESPMMRKANSTIELMEMSPKEKWLYENRMKYehdkA 234 Treponema denti...
Q73N12       160 EKAKLLKEAQCKDnk-tkRLLNWLKFIETDDREVREMLEQ----ESPMMAKANTAISVMEMSSKDKWLYDSRMKYehdrA 234 Treponema denti...
Q73K05       162 ETAKLLEESNYTDik-tkRLLSWLKFIETDDREVRKMLAQ----NSKTMKKANAAIEVMEMSPRDKWLYESRMKYqhdmA 236 Treponema denti...
Q8XNB3       158 PKFNEIGNKENVDvekmdALEKWLEFLVEPESNTVRQLEL----SNEEIKLAKSELYRLSMDSKEREQYNMREKAiydrI 233 Clostridium per...
Q24PT3       160 SKWKALSVKPKTR------LDKWLMYLSNTNPQEMEEIAM----SEPAIRKALTAEEIFLKQDKERYLYEMREKAlldhV 229 Desulfitobacter...
WP_012508639 159 KKFNKLHHEISST------LDRWTTFLTTAHQLDREHTPKel-aVDKNIVKAIAAIDRM-FNEEERQVYEVRKQSlvdaE 230 Pelodictyon pha...
WP_015807586 181 LNFVKGSDELYTE------LDKWLYALKHLTEFKQRPEYL----SGPEFDQLFTLANYASLTPEERDMYNSSLKRkwdnK 250 Pedobacter hepa...
Q24RR6       246 AAIREA 251 Desulfitobacterium hafniense Y51
Q73J06       226 MYVEDE 231 Treponema denticola
Q2FSM1       240 YGLQAA 245 Methanospirillum hungatei JF-1
Q73QP0       235 SWKHVG 240 Treponema denticola
Q73N12       235 SCISEG 240 Treponema denticola
Q73K05       237 SEKHEG 242 Treponema denticola
Q8XNB3       234 SALESs 239 Clostridium perfringens
Q24PT3       230 SAIEGA 235 Desulfitobacterium hafniense Y51
WP_012508639 231 SKIASA 236 Pelodictyon phaeoclathratiforme
WP_015807586 251 NVLDYA 256 Pedobacter heparinus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap