3WCN


Conserved Protein Domain Family
selA

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TIGR00474: selA 
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L-seryl-tRNA(Sec) selenium transferase
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. [Protein synthesis, tRNA aminoacylation]
Statistics
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PSSM-Id: 273099
Aligned: 35 rows
Threshold Bit Score: 487.843
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3WCN_A         5 LRQIPQISKVVEI-----FAKAYPEIYVVKAAREVAEKYRKEIIEGAR------ADLNGFLEDVERKIKSLXKPNIKRVI 73  Aquifex aeolicu...
WP_012048015   7 LRNLPKIDELLKEeivnrYLQENSRTLVVDSLRQSIDYYRGEILKNNId----sFTKENVVNYFIDTLEENKSTKFKKVI 82  Clostridium bot...
WP_011026039   5 YRKLPSVDEILREekineVLKFNKREVVKNCIREVLERYREKIRRGEVk----kIDIEKILEDVVSQIEEKKKMSLRRVV 80  Caldanaerobacte...
WP_010880641   5 LRQIPQISKVVEI-----FKKKYPEIYVVKAAREVAEKYRKEIIEGKRk------DLNGFLEDVERKIKSLMKPNIKRVI 73  Aquifex aeolicus
WP_011372462   4 LKSIPQVDKFIKNekfasL----PLTLLVQITAEVLQDLRERILKNEIe----sFSEDELVKKVLQKYKDITKPSLQKII 75  Sulfurimonas de...
WP_011138748   5 LRSLPKIDKILQEsr----fADHSKELLTTLARDYLEEIRAQFLQDATpi----pPSESILQEVERRYEASLAPSLVPLV 76  Wolinella succi...
WP_011115582   5 LKSLPKVDTLLAHne----lKMFQKSTLLPLIQSHLSLLRENICSNTLspkeleSALNEIIPVIKKKAIEATKPTLTRVI 80  Helicobacter he...
WP_002858009   4 FRTFPQINTLIEDes----lKSYPFYIKAFFCKKVVAKLKENFFQDEI-------SKDKLLLEIKKEIKTFYRKDLQSVI 72  Campylobacter j...
WP_011221562   6 LSAIPQIGKMLEQaflspYIERLSQPVVADLVREQVNGYKKDHLRNPEhi---pFSLETLYSRIERACWQVNQQRLQRVI 82  Photobacterium ...
WP_011706333  23 qRRLPQVEQLLQQpflarFIEALSRPLVTQAVRDTLSELRQ---SETFrq--hgVASERLEALIAKRCQQQLRQRQTRVI 97  Aeromonas hydro...
3WCN_A        74 NATGVVINTNLGRAPLSKDVINFISEIANGYSNLEYNLEEGKRGSRIAHIEKYLNELTGAESSFVVNNNAGAVFLVLNTL 153 Aquifex aeolicu...
WP_012048015  83 NATGVVIHTNLGRSLLAKEAIENVVKVSENYSNLEYDLKEGKRGSRYSHVEELIKKVTGAEAAMVVNNNAAAVMLALNTL 162 Clostridium bot...
WP_011026039  81 NGTGIILHTNLGRALFPPQVKEHLLDIAFCYSTLEYDVEKGERGSRYSHVEKLLCELLDVEAALVVNNNAAAVLLALNTL 160 Caldanaerobacte...
WP_010880641  74 NATGVVINTNLGRAPLSKDVINFISEIANGYSNLEYNLEEGKRGSRIAHIEKYLNELTGAESSFVVNNNAGAVFLVLNTL 153 Aquifex aeolicus
WP_011372462  76 NATGVIVHTNLGRSLIDANAFERVKGIVTSYNNLEYDLEKGKRGERYSHISDAICRLLGCEDVLIVNNNASAVFLILNTF 155 Sulfurimonas de...
WP_011138748  77 NATGIIVHTNLGRSVFAPELIEEIKPLLTSYNNLEYDLKAGRRGERYSHLHGILKAILGCEEVLVVNNNAAAVFLILHTF 156 Wolinella succi...
WP_011115582  81 NATGVVIHTNLGRSVLSPQILDEITPFLRSYHTLEYDLAKGKRSERYTHTKQILCEMFGCEDALLVNNNAAAVLLILNTF 160 Helicobacter he...
WP_002858009  73 NASGVVIHTNLGRSVIHEELYEACKDIICNYSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSL 152 Campylobacter j...
WP_011221562  83 NGTGVIVHTNLGRSPLDADVWQAVTEVNTHYSNLEIDLTTGKRGKRKGLLQQLMHYLVKGEDTLVVNNNASSIYLMLHEI 162 Photobacterium ...
WP_011706333  98 NATGTLVHTNLGRSPLSSDLWDEVRDLNTGYNNLELDLATGKRGGRKGLIAPLLRCLTQAEDSLVVNNNAASLFLLLQEV 177 Aeromonas hydro...
3WCN_A       154 AEGKEVIISRGELVEIGGSFRIPDIXKKSGAILREVGYYNKTKVSRYEGAINQNTALLXKVHKSNFPXEGFVEEVKLEDL 233 Aquifex aeolicu...
WP_012048015 163 CEEREAIVSRGQLVEIGGSFRVPDVMKFSRAHLVEVGTTNRTHLYDYENNINENTGVLLKVHTSNFKIMGFTEEVSSEEM 242 Clostridium bot...
WP_011026039 161 AKGKEVIVSRGQLIEIGGSFRIPDVMLQSGAILKEVGTTNKTYDFDYINAITENTALLLKVHTSNYRIVGFTHDIATEEL 240 Caldanaerobacte...
WP_010880641 154 AEGKEVIISRGELVEIGGSFRIPDIMKKSGAILREVGTTNKTKVSDYEGAINQNTALLMKVHKSNFYMEGFVEEVKLEDL 233 Aquifex aeolicus
WP_011372462 156 AKQKEVVVSRGELVEIGGSFRVPDVMKQSGAKLVEVGATNKTHLYDYENAISKKTSMLMKVHKSNYSIEGFSSEVEFKEL 235 Sulfurimonas de...
WP_011138748 157 AQNQEAIISRGELIEIGGSFRIPEVMKNAGAILKEVGTTNKTHRRDYEEAITPQSALLMKVHKSNYDIVGFTQEVDLQEL 236 Wolinella succi...
WP_011115582 161 AAHKEVIISRGELVEIGGSFRIPEVMKSASSILCEVGATNKTHLKDYENAINEQSAMIMKVHQSNFKQIGFVKQCHIKEI 240 Helicobacter he...
WP_002858009 153 CYDKEVISSRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAINENTALILKTHKSNFALMGFHSEVNIKDL 232 Campylobacter j...
WP_011221562 163 AKGKEVIVSRGEQIQIGGGFRIPDILALSGAKLVEVGTTNITTVDDYLDAVTDNTAMVLIVHTSNFKIRGFTQSPDIKDL 242 Photobacterium ...
WP_011706333 178 AKGREVIVSRGEQIQIGGGFRIPDILALSGAKLVEVGTTNITTAKDYLDAITDQTALVLMVHRSNFAIRGFTESADIGEL 257 Aeromonas hydro...
3WCN_A       234 VKLGHKYGIPTYYDAGSGLLINLKEFGI-SvDEPNFRDCISLGIDLVSGSGDKLLGGPQAGIIVGKKNLIEKIKKNPIAR 312 Aquifex aeolicu...
WP_012048015 243 VQLGGKYKLPVMEDIGSGTLVDFSKYGF-T-YEPTVQSSLEKGVDVVTFSGDKMLGGPQAGIIVGKKKYIDKMKKNQLTR 320 Clostridium bot...
WP_011026039 241 VQIGRKYDIPTMEDLGSGVMVDLREYGL-P-HEPTVQEVVKAGVDIVTFSGDKLLGGPQAGIIVGKKKYIDLMKKNPLTR 318 Caldanaerobacte...
WP_010880641 234 VKLGHKYGIPTYYDAGSGLLINLKEFGI-SvDEPNFRDCISLGIDLVSGSGDKLLGGPQAGIIVGKKNLIEKIKKNPIAR 312 Aquifex aeolicus
WP_011372462 236 VKLAREKNLIDYYDMGSGHLVNLP-YGLdQ-HEPSVLKYMQENPSLLSFSGDKLLGSVQAGIIVGKKEYIAKLKKNQLLR 313 Sulfurimonas de...
WP_011138748 237 IELSQKHNLIDYYDLGSGFLESVP---F-T-NEPTLKKIASLSPSLVSFSGDKLLGGAQAGIIFGKKSLIDRLKKNQLLR 311 Wolinella succi...
WP_011115582 241 IHLAQKHHLIDYFDLGSGHIGALP---L-A-DEPSVREICKYKPSLLSFSGDKLLGGPQVGIIIGKSQLIAQLKHNQLLR 315 Helicobacter he...
WP_002858009 233 HELAKEKELLSYYDLGSGWCENLNEKLI-K-NEPKIRKLVQE-CDILSFSGDKLFGSVQAGIILGKKELIEKLKQNQLLR 309 Campylobacter j...
WP_011221562 243 ADLLPDH-VVLAVDQGSGTTTE----NL-P-DEPSVMSYIKAGADLVCFSGDKIIGGPQAGMVTGKQSLIKRLEKNPMMR 315 Photobacterium ...
WP_011706333 258 AHALPEH-VVLAVDQGSGLTTEEFA----P-DETSVRQYIKAGVDLVCYSGDKLLGGPQAGIISGRADLIKRLEKHPMMR 331 Aeromonas hydro...
3WCN_A       313 ALRIDKLTLSGLEXTLKLYFEKR--YEDIPVIRXLTQDEKALRQKAKRLEKL-LKDI--PgLKISVIKDKAKPGGGSLPE 387 Aquifex aeolicu...
WP_012048015 321 ALRIDKMTLAALEGTLKCYIDEKeaIENIPTLNMILSSKDIHKKRAQRLKRR-LQNNvkD-FNFKVSEDLSMVGGGSMPG 398 Clostridium bot...
WP_011026039 319 ALRVDKLCLVSLECVLRIYRDSNp-VEAIPTLKMLTAKPSQLYEKAAILNKL-VLTI--PkVKSKVVEITSLSGGGSLPE 394 Caldanaerobacte...
WP_010880641 313 ALRIDKLTLSGLEMTLKLYFEKR--YEDIPVIRMLTQDEKALRQKAKRLEKL-LKDI--PgLKISVIKDKAKPGGGSLPE 387 Aquifex aeolicus
WP_011372462 314 MLRVDKLTLALLEDSVISVLLNK--LDEIPTLKMLFASTCELKENALVLQDA-IK----DiCDCEVLETKTVIGGGTTPN 386 Sulfurimonas de...
WP_011138748 312 MLRVDKFTLAALEATLRAHLLHD--YEKIPTLKMAHLSLEELEERAKKLKSR-V-----HgYESQILQTQGYAGGGALPN 383 Wolinella succi...
WP_011115582 316 ALRVDKFSILALQATLKAYQNKE--YHKIPTLAMLAFTPKELESKAKNLKKRiLASSiaSeLEVEVIPLHSLAGGGSVPH 393 Helicobacter he...
WP_002858009 310 MLRVDKLTLSFLNESLKAYLQKD--YEKIITLKLLNDDLSFIEKKALRVQKE-LK------FQTQLKKSKSLVGGGSMPD 380 Campylobacter j...
WP_011221562 316 AFRPSRIVYSLLEELAVRKLNQLktGQGIAE-RSITQAEVTLENKAQQLAEG-FGE------RLRIVRSEMTVGGGSLPD 387 Photobacterium ...
WP_011706333 332 TFRSSRIIHSLLERLLIHKLNKSpvGEGIA--QQVLSNPAAMQARASQLMAA-LPGCfvP------VPAQLVVGGGTLPD 402 Aeromonas hydro...
3WCN_A       388 LELPTYCVAIRHDRLSSQELSRRLRLAEPPIVCRIREDQLLFDXRTVFHEDLKTIKKTLQ 447 Aquifex aeolicus VF5
WP_012048015 399 ERIPTYVVKVNSDKITAEKIEEKLRLSKNPIIVRVSKDEVILDVRTLFERDFNIIVEEFK 458 Clostridium botulinum
WP_011026039 395 ESLPSYGITLEVEGFDTEDLERRLRIRDIPIITRIVDGVVTIDVRTLLEGDEEVILHALE 454 Caldanaerobacter subterraneus
WP_010880641 388 LELPTYCVAIRHDRLSSQELSRRLRLAEPPIVCRIREDQLLFDMRTVFHEDLKTIKKTLQ 447 Aquifex aeolicus
WP_011372462 387 KMIPSIALAIKIDNYKQNKMEKLFRAKN--IIGRIENDRFLLDFRTIRKSEIQEIAHVVK 444 Sulfurimonas denitrificans
WP_011138748 384 QSFFSIALALCHPQKSPMELEQSLRARG--VIARIEQERVLLDMRTIFTSQLESLAQILN 441 Wolinella succinogenes
WP_011115582 394 LSFDSFGISLQAKHLQVQDFEFALRALG--LISCIQGEKILLDVRTLLEGDEERIMEILG 451 Helicobacter hepaticus
WP_002858009 381 KSLDTYILTFQGDAL---KLQTRFRKEN--IIGRIENDEFVLDFRTIRENELQKLILTIN 435 Campylobacter jejuni
WP_011221562 388 QQSPSSSVEVNAISLSADKLLEIMRNWPLPVIGVIKHDRVQLNLATISDDEITYLRQQLA 447 Photobacterium profundum
WP_011706333 403 EFYPAPALECTDPR-PAQQLLDDLRELPVPVIATVRQQKVLLNMATLLPAEMEQLIAQLR 461 Aeromonas hydrophila
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