2YNK


Conserved Protein Domain Family
Caps_assemb_Wzi

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pfam14052: Caps_assemb_Wzi 
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Capsule assembly protein Wzi
Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organization of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.
Statistics
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PSSM-Id: 433677
Aligned: 31 rows
Threshold Bit Score: 235.663
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YNK_A         62 LSALKADFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFN-NSGEWWDVHLQGNVEGGERi--------sNGSRFNANGA 132
jgi:Ctha_1221 102 LRDEVFPTSAMRVGVRLSEIARKEDGVSFSPKFRGRGRLAlFFGEDFVIYNSSVVQQNNAydivartrtyGKSTAYTEQA 181
Q0VR46        101 AKQSTRGASITLGVANQEPLY-TSFDTQVEDEQTSQVTLY-GMGDRWAGRLAIGYVDGDR----------DNEYVRMDDS 168 Alcanivorax bo...
Q8E8H9         98 AVDNRGNARVKVSGATDPARF-QHYGSDYREKGEVKASYE-YLGSRVAYKTTVAETYDPQ----------DNKNFRLDES 165 Shewanella one...
jgi:Sama_0111  88 AVENRGNTRLKAVGATDEARF-QHFGSDYREQGELKASHE-YMDNRFAFKVSATAAYDAQ----------DDKDFRLDDS 155
WP_013049398   94 AVDNRGNTRIKAAAATDAARF-RHFGSDYREQGDVQVTHE-YVGERFAFKVSASAHYDPL----------DEEEFRLDDS 161 Shewanella vio...
Q07W64         95 AVGNRGNTSIKVAAASDEARF-QHFGSDYREKGQLQGSHE-YTGERFSYKISASANYNPA----------DDEEIRLDDS 162 Shewanella fri...
Q12SS0         90 AINNRGNRSMKLATASESARF-QHFGSDYREKAALSGSTE-YLGERFAFKASASMNYHPD----------DDKNLRLDNS 157 Shewanella den...
WP_007641997   58 HKKQKGQSVISLYGATDDSRF-VGFNGVQAEKVKLNVTKE-FYAGRWAGQISANHE--------------RGGESHFDQS 121 Paraglaciecola...
SDU:GNIT_0060  95 QKQEKSRTFLELQASSDDPRL-TSFDGINDIKASAKVTSE-FYWDRLSGQLSVNYQ--------------SGGEKNLDNS 158
2YNK_A        133 YGAVKFWNQWLSFGQVPQWWGPGYEgSLIRGDAXRPXTGFLXQ--RAEqaAPETWWLR-WVGPWqYQISASQXNQYNA-- 207
jgi:Ctha_1221 182 YAAYHGKTFRLKFGRDYINWGYGRN-SLAVSNTAGSFDQLMFQi-NTQ--TIRFTYFTaMLDRW-WDASADTMEIASMad 256
Q0VR46        169 YLAGIVGNWQLGVGAIDRWWGPGWQsSLALSNNARPIPGVWLSrqMPL--APQSPWLS-WIGPWdLQFIAGRQEQDRA-- 243 Alcanivorax bo...
Q8E8H9        166 YFAVIMGNWIATLGTVEQWWGPGFDsSLHRSNNARPMQSLSLSrnNAA--AFETPWLA-WIGPWaFKTGFSMAEKERA-- 240 Shewanella one...
jgi:Sama_0111 156 WMSLVLGNWVFTAGTVEQWWGPGFDtALHKSNNARPMPSLMLSrnNAA--AFETPWLS-WMGPWtLTTGISWMNDNRA-- 230
WP_013049398  162 YLAMALGNWMLTAGAVEQWWGPGFDsALHRSNNARPLPSVLISrnNSA--AFETPWLS-WLGPWtLTAGISRLEEDRA-- 236 Shewanella vio...
Q07W64        163 YIAVVLGNWIVTAGSVGQWWGPGFDsSLHKSNNARPMPSLMISrnNSQ--AFETPWLS-WIGDWsLTGGVSVTEEDRY-- 237 Shewanella fri...
Q12SS0        158 YIAMILGNWVFTAGAIEQWWGPGFDtALHKSTNARPMPSLMMSrnNAN--AFETPWLS-WMGSWnLTAGISVAEKERF-- 232 Shewanella den...
WP_007641997  122 FLAYQFGDWNLRVGSLNQWWGPAQSsSLIMSNNARPVPSISFSrsQAI--RSENKWLR-YLGPWfLTAQIGQLESQRA-- 196 Paraglaciecola...
SDU:GNIT_0060 159 FLAYQFGEWNVRAGSIDQWWGPAQSsSLILSNNARPIPTLALSrsSAV--ASESQWLS-WMGPWyFTSQLGQLESNRA-- 233
2YNK_A        208 VPHAKIIGGRFTFSPIQ-SLELGASRIXQWGGKGRPESLSNFWDGLTGKDnt-----aaN--DPNE-PGNQLAGFDFK-F 277
jgi:Ctha_1221 257 HIDRYYTAERLDFNLFNsNLRFGFWQGVVYGGKNQSIDFRFANPLLLYHG---------EqyNDEE-EINPLGGVDLSvY 326
Q0VR46        244 VPDAHVLGARFVFKPLD-SLQIGLTRLAQWGGEGRPQNFQAFWDATIGRDng-----esSgfDDDDdPSNQIGGVDFR-L 316 Alcanivorax bo...
Q8E8H9        241 VPKTAEWDMRFTAKPIK-QLEVGLSWSTLFCGEGQNCDFDSWWDSVAGNAvcidgsdscLaeQRRD-AGHKTQSIDLR-Y 317 Shewanella one...
jgi:Sama_0111 231 VEDTLLWNFRGTLKPVQ-QLEIGASWTVQMCGEGQDCGLGTFWDTISGGGecadgsldcDsaQNSR-LGNQMAGWDIR-Y 307
WP_013049398  237 VANPLLWNFRSSVRPFR-QLEVGFSWSTQFCGEGEECSWKSALKSITGQRdcr----gaGveGCTN-YGNQMAGYDVR-F 309 Shewanella vio...
Q07W64        238 APHTLLWNLRGAIKPFR-QLEIGLSWTTQFCGEGQECSFNTAVKSITGQRdcra--dnvDefGCSN-YGNQMAGFDVR-Y 312 Shewanella fri...
Q12SS0        233 APRMLLWNMRASVKPVQ-QLEIGLSWTTQFCGKGQECDWDVALKSITGQRdcra--dsaDvfGCTN-YGNQMAGFDVR-Y 307 Shewanella den...
WP_007641997  197 VPDTKLWMTRFNFSPVS-GLELGLSWSAMWGGKGQPHSISDWFKVVTFQTecangaatcDdaLDSK-LGNHLAGLDFK-Y 273 Paraglaciecola...
SDU:GNIT_0060 234 VPDTKLLLNRFTFSPFK-RFEFGASWAAMWGGEGQPNSFSDFIDVITFQAvctrerdvcDdsDLTK-QGNHLAGFDAK-Y 310
2YNK_A        278 KLEPtLGWPVSFYGQXIGEDESG---FLPSANx-fLGGIEGHHG---WGKDAVNWYLEAHDT-----RTNXSRTNYSYTH 345
jgi:Ctha_1221 327 PYEG-VNFYASFLVDDWQFDEEDvndLEPNNWg-gLFGVRAANVlrkFDLYGTDAFFEFTKVt---nRTYNQRDAFEYQK 401
Q0VR46        317 SLNP-GDVPLGIYGQFIGEDEAG---GLPSKRs-sLAGIDIVTG---WGKGSQRFFAEATETvagswFGDRR-HNVMYEH 387 Alcanivorax bo...
Q8E8H9        318 ADTW-QDIPVGLYLEHSCENGSDcg---------sLWGIDSHFG---TAGKQFKLFMEYSDTfvecgG----KANCFYED 380 Shewanella one...
jgi:Sama_0111 308 ADTW-FNVPVGLYLERTCEDSSGp-mPWDLADcakLAGVDTRFG---FKDHQYKLFLEYTDTlvacgSD-DNVFNCFYEH 381
WP_013049398  310 SDTW-LNIPFGVYYEKTCEDAKGs-aPWDIVDcshLGGLDTRFN---FDAAQFKLFFEYTDTlvacgED-DNAFNCMYEH 383 Shewanella vio...
Q07W64        313 ADTW-FDVPVGLYLERTCEDSKGd--PWQIVDcgkMVGADTRFS---IAKQQYKLFIEYTDTmvycgED-KNQFNCFYEH 385 Shewanella fri...
Q12SS0        308 GDIW-FDVPVGIYLERTCEDSLGd--PWQITDcgkMVGVDTRFN---FAKQQYKLFAEYTDTlvycgAD-ANSFNCFYEH 380 Shewanella den...
WP_007641997  274 TMMW-FDRPFSIYGQRIGEDAVD---YYRVTDnanLMGLS-------TYLWGNKVFIESSDTnvacsNAGTNEKNCYYEH 342 Paraglaciecola...
SDU:GNIT_0060 311 TFKL-FERPISVYAQRIGEDAVS---GINITDqanLFGISTYFA-------NAKVFLESSDTnitcaGDGSTITNCYYEN 379
2YNK_A        346 -HIYKdGyyqqgyPLGDAXGGDGQLVAGKVELITEDNQRWSTRLVYAKVNPENQ------SinKAFPHA----DTLKGI- 413
jgi:Ctha_1221 402 -LVFGdN------PIAHPLGTDFESFECGVSHWLYKDLQLSLNLKMVAKGEGNLdefdtpWleDGVTLEtgyeEDSPTGi 474
Q0VR46        388 -STYKtGfryhgrNLASTWEGDAKVTTLGVQQFFRNDVTVSLSLSRATLNDEGStra-vlHidGDEILQaadeQDITLA- 464 Alcanivorax bo...
Q8E8H9        381 -PVYLsGaryygrALGSTYDSDAQVFVLGLVGQFHNSRGFTSLLRYAKLNKDGTnva-ttW--APQPPK----EDLLML- 451 Shewanella one...
jgi:Sama_0111 382 -TTYLsGsryyrrSLGSTYDSDAETWVLGLIGQFGDSKGINAYLRYAQLNKDGKnhs-seW--TPQPEK----EDLLML- 452
WP_013049398  384 aTTYKsGsryygkTYGSTYESDATVYALGLIGQFKDSKGITSILRYAQLNKDGSspa-teW--VAQRAQ----EDLLML- 455 Shewanella vio...
Q07W64        386 -STYQsGsryygrAFGSTYDSDANVYALGLIGQFDNSHGFTSILRYAQLNKDGAnrg-gvW--APQPLK----EDIMML- 456 Shewanella fri...
Q12SS0        381 -STYLsGnrhygrALGSTYDSDANTYVLGLIGQFANSQGFTALLRYAKLNDDGSnrg-gnW--APQPLK----EDLTMA- 451 Shewanella den...
WP_007641997  343 -ETYQsGyrrydrAIGSSFDSDAKMLTLGINKNFRDGDLFELVINQLTLNKDKQ---------KPAPVLngmsEEILRL- 411 Paraglaciecola...
SDU:GNIT_0060 380 -GVYTsGyryrgrAIGSTFDSDAKQVTVGANIRFDGGAIAEVILRKAELNPDGT---------RPSPVLtddvTEDLLQ- 448
2YNK_A        414 -----QLGWSGDVYQS-VRLNTSLWYTNANNSDSDDVGAS 447
jgi:Ctha_1221 475 iertnTLTLGVFYQPG-SSVNGELKLARVWVDNVDHVEGK 513
Q0VR46        465 -----ELRIGHPLLGGrLNWLLSTTNEAVVTYEKRERFTa 499 Alcanivorax borkumensis SK2
Q8E8H9        452 -----ELSYRMPVWKG-M-WSVGGTVSRSEFEVQDNDTNA 484 Shewanella oneidensis
jgi:Sama_0111 453 -----EVSYRQPMFKG-M-VTLGGTVSRSEFDTKTDNDAt 485
WP_013049398  456 -----ELSYRMPLLKG-M-MSVGGTVSRSEFETQESESDa 488 Shewanella violacea
Q07W64        457 -----ELSYRLPMFNG-M-LTLGGSVANSEFEVQDDDTQG 489 Shewanella frigidimarina NCIMB 400
Q12SS0        452 -----EVSYRLPMLKG-M-VTVGGTVSQSKFVTEKDETNA 484 Shewanella denitrificans OS217
WP_007641997  412 ------SGFYQAAYGD-WLVKLGASIERGEVDDADAKTDA 444 Paraglaciecola psychrophila
SDU:GNIT_0060 449 -----LSGFYQRPFGD-WLLKAGGSIESRKFVTQDNEVDA 482
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