Conserved Protein Domain Family
MdpB

?
COG4675: MdpB 
Phage tail collar domain [Mobilome: prophages, transposons]
Statistics
?
PSSM-Id: 443711
Aligned: 314 rows
Threshold Bit Score: 72.4883
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_035680479   1 MD-FYIGSVFPF-------AG-----------N--FAP-------------VNTQQCLGQAVNSAQFQALWAITAGAFGt 46 
WP_013596480   2 DE-SYIGTVLLW-------TA-----------A--FVP-------------RGWALCDGSVLNIAQNPALFAILGSRFG- 46 
WP_013596481   2 DE-AYIGTIVLW-------AG-----------S--WVP-------------RNWALCDGTQLKIMDYQALYSLIGVRYG- 46 
WP_013596482   1 MD-PILGQIILW-------AT-----------P--WIP-------------RGWAICDGTLLSIQQNAALFSLIGTAYG- 45 
WP_013633447   2 ID-VYAGAIILW-------PL-----------N--RIP-------------LGWHLCDGSLLNINEYQLLYVLLGKKYG- 46 
WP_013633448   1 ME-TFYSSIILW-------PL-----------N--WAP-------------AGYLLCQGQELLVNQYPALYSLIGQTYG- 45 
WP_014399622  27 GE-PPVGSLVAF-------AGevag---rgsdSqhATPae----------lEGWLVCDGRPLAKGEYPELFAAIGHRYSp 85 
WP_111371921 168 pneGTIGEIKIWpnaktdgSL-----------G--AIP-------------NGWRLCNGDLLASSQNSALYSIIGYHYG- 220
WP_111371921 168 pneGTIGEIKIWpnaktdgSL-----------G--AIP-------------NGWRLCNGDLLASSQNSALYSIIGYHYG- 220
WP_126452886   3 PDaLPVGSIIPY-------AGpinnpnnpnggS--NYPdygskaynlylqqHGWLVCDGSTVLVAKYPELFRFIGFIYG- 72 
WP_035680479  47 AKD-NSTFNLPDLRGRVMVGPG---TSpyt----------stTLinGYAGGTQYTTIIGNNLPMHTHGAafqggsaggtv 112
WP_013596480  47 GDG-RTTFQLPDLRNRVPMGLQ---TAdqppg-----ptgaaSHs-VALSGAAVGMVSASQLPPVG-------------- 102
WP_013596481  47 GDA-RTNFNLPDLRNRVPMGLQ---AAsqtpg-----ttgaaSQv-LTVTGAATGMIAANQLPPMS-------------- 102
WP_013596482  46 GNG-VSTFALPDLRNRVPVGSQ---NAanv---------aitSGa-ATASTTASVTLAASQLPPHTHAV----------- 100
WP_013633447  47 GDG-VTNFALPDLRGRVPIGSG---QGpnl----------tpRVl-AQTGGQGAHTLTLAEMPAHIHVAttqgva-nvka 110
WP_013633448  46 GSG-QSTFKLPDLRTYIPVGKG---QIpgs----------vnLDl-GKTTGEAQHTLNVNEMALHSHAGnigg-----vv 105
WP_014399622  86 TED-GDTFLLPDLQGVFLRGVD---AKgqvdk-----dqsqrTMv-SGTAKAEVGSLQPHALQLHEHQL----------- 144
WP_111371921 221 GSIaRNEFKLPDFRNRFATGIT---RS---------------EKv-GATGGKTNIRLDKNNLPPHNHSV----------- 270
WP_111371921 221 GSIaRNEFKLPDFRNRFATGIT---RS---------------EKv-GATGGKTNIRLDKNNLPPHNHSV----------- 270
WP_126452886  73 QAG-PGKFMLPDYRGRFLRGVNldaSGpdnlprdpqegqrtaSSs-GGWSGNQVGSVQEDAFQAHDHLY----------- 139
WP_035680479 113 pfNATv----Tvp-----lNp-AvGTSNI-----P--SAipA-Vlgg------------qfiDPStDv--VLdg--pYip 158
WP_013596480 103 -------------------G--K-ASLGI-----P--AN--S-AptlanvsetpgpgsvqskGKGgNfdvKE-----W-- 143
WP_013596481 103 -------------------G--K-ASVSI-----P--VN--N-ApvaanltdvpgptgvlakGTAgNfgaKI-----Y-- 143
WP_013596482 101 --AAAgngklSvaipanagA--A-ADTNA-----P--AN--GlVlg---------------kGTAgNfptKI-----Y-- 144
WP_013633447 111 vlNVS-----S--------A--N-ASQTA-----At-AN--A-Tl----------------aTAGsGsgrSFnpvlkY-- 147
WP_013633448 106 tlAVS-----N--------D--N-AGASV-----Pt-AG--SsIsv---------------aGTNtG---GV-----F-- 136
WP_014399622 145 --TQA-----S--------Af------AT-----PsqQGte--------------------------------------- 159
WP_111371921 271 --KLG-----V--------N--N-NTDSTphtqlP--NN--A-Fi----------------nSNA-----GT-----F-- 299
WP_111371921 271 --KLG-----V--------N--N-NTDSTphtqlP--NN--A-Fi----------------nSNA-----GT-----F-- 299
WP_126452886 140 --EKA-----T--------SqtAlGy-AG--------KGaf----------------------------------dsY-- 159
WP_035680479 159 As-Sl---P-TpP-TgS-S-LtgvlSPq--GtvsggptgatvE-V------------SP-GGGvvs-tpVA--------- 204
WP_013596480 144 T--S----D-A-A-N-A-N-L----KPf-dA-----------P-VtvapvgaqqplaLPvAAA------GT--------- 179
WP_013596481 144 T--S----D-A-A-N-T-N-L----KPf-dA-----------P-VtispgsaqqplsLPvSLS------GP--------- 179
WP_013596482 145 T--A----A-A-S-D-A-T-L----KPfdvDl---------pV-L------------TAqASS------TPaapvsipvt 180
WP_013633447 148 G--N----S-A-P-T-V-I-L----NS---K-----------S-Vaisg----dytnSGtGGG------GS--------- 177
WP_013633448 137 TprQnfvmS-D-P-D-T-T-L----NL---GsigvntqgsgvT-Vv----------nATtGGS------QA--------- 177
WP_014399622 160 -------aG-S-Sv--T---L----TGq-------------tSaVi----------dDPkGTApl--ktSP--------- 187
WP_111371921 300 S--E----EiS-S-L-A-T-L----GG-----------------Is----------qEDkGSY------ED--------- 322
WP_111371921 300 S--E----EiS-S-L-A-T-L----GG-----------------Is----------qEDkGSY------ED--------- 322
WP_126452886 160 ---Ti-------PeAqTdGaV-----------------------V-------------PtGYTptisirQA--------- 184
WP_035680479 205 LNNLQPYQSLLFFIFML-G-YFPSRD 228
WP_013596480 180 MGTLQPSLTVAFIICVE-G-LFPPRP 203
WP_013596481 180 VSTIQPSLTLNFIICLL-G-LYPDRP 203
WP_013596482 181 VSTLQPGITLNFIIATT-G-IYPSRN 204
WP_013633447 178 HNNVQPSFALNFIICTN-G-LYPDFN 201
WP_013633448 178 HNNMQPYLVLNAIISID-GpVYPDFN 202
WP_014399622 188 TETRPVNVYVYFLIKARrA-IAPGLA 212
WP_111371921 323 IDVTNPSLGLNYIICTQ-G-IFPSAG 346
WP_111371921 323 IDVTNPSLGLNYIICTQ-G-IFPSAG 346
WP_126452886 185 PETRVKNAYVNFIIKCSrR-PRPFGS 209
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap