1A4X,1DKR,1U9Z,1UFR,1ORE,3DAH,1VDM,2YZK,1WD5,2H06,2DY0,1L1Q,1BZY,1R3U,3MBI,1CJB,1G9S,1O5O,3ACB,1W30,1G2P,1HGX,2EHJ,3H83,1MZV,3O7M,1I5E,1ORO,1P19,1P4A,3QW4,1XTT,2WNS,2JI4,3M3H,2PRY,1NUL,1QK3,2E55,3DMP,2AEE,1BD3,1V9S,1ECF,2XBU,3MJD,1Y0B,1PZM,1AO0,2P1Z,1VCH,1DQN


Conserved Protein Domain Family
PRTases_typeI

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cd06223: PRTases_typeI 
Click on image for an interactive view with Cn3D
Phosphoribosyl transferase (PRT)-type I domain
Phosphoribosyl transferase (PRT) domain. The type I PRTases are identified by a conserved PRPP binding motif which features two adjacent acidic residues surrounded by one or more hydrophobic residue. PRTases catalyze the displacement of the alpha-1'-pyrophosphate of 5-phosphoribosyl-alpha1-pyrophosphate (PRPP) by a nitrogen-containing nucleophile. The reaction products are an alpha-1 substituted ribose-5'-phosphate and a free pyrophosphate (PP). PRPP, an activated form of ribose-5-phosphate, is a key metabolite connecting nucleotide synthesis and salvage pathways. The type I PRTase family includes a range of diverse phosphoribosyl transferase enzymes and regulatory proteins of the nucleotide synthesis and salvage pathways, including adenine phosphoribosyltransferase EC:2.4.2.7., hypoxanthine-guanine-xanthine phosphoribosyltransferase, hypoxanthine phosphoribosyltransferase EC:2.4.2.8., ribose-phosphate pyrophosphokinase EC:2.7.6.1., amidophosphoribosyltransferase EC:2.4.2.14., orotate phosphoribosyltransferase EC:2.4.2.10., uracil phosphoribosyltransferase EC:2.4.2.9., and xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Statistics
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PSSM-Id: 206754
Aligned: 1089 rows
Threshold Bit Score: 30.8268
Created: 8-Jan-2008
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1G9S, Escherichia coli hypoxanthine phosphoribosyltransferase with bound IMP, contacts at 4A
    View structure with Cn3D
  • Structure:1DQN; Giardia intestinalis guanine phosphoribosyltransferase with bound transition state analog, contacts 4A
    View structure with Cn3D
  • Structure:1AO0; Bacillus subtilis glutamine phosphoribosylpyrophosphate with bound ADP and GMP, contacts 4A
    View structure with Cn3D
  • Citation:PMID 9271502

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    # #                                                 
1A4X_A        16 ALTRIAHEmiernk----gmnncILVGIKtRGIYLAKRLAERIeqiegnpvTVGEIDItlyrddlskktsndeplvkgad 91  Bacillus subtilis
1G9S_A        21 RIAELGRQiteryk---dsgsdmVLVGLLrGSFMFMADLCREVqv----shEVDFMTAssygsgmsttrdlk----ilkd 89  Escherichia coli
NP_717587    155 FVAAIAAQltg----------elVLVSPDaGANKKVFGLAKALqg-----mPVIRADKhrdvvnghiiat--------ev 211 Shewanella onei...
Q680A5       179 GIPLLTKRlqqlp-----etekvIVAFPDdGAWKRFHKLLDHY--------PTVVCTKvregdkrivr-----------l 234 thale cress
YP_045679    148 TSPALTELlqq---------qhtVLVCPDrGAKARTAAIAQYFnpkrsqqiAIIHCDKtrepttgkitss--------vv 210 Acinetobacter s...
YP_001440398 130 AIPQERCLlqsktleralkagelMLVAPDaGALKKIHAVAQAAgv-----hEFAILTKqrnvatgeltgf--------rl 196 Enterobacter sa...
XP_001765886 294 GIPLLKHRlhqlp-----dsnnvTIAFPDeGAWKRFYKQLQHF--------PMIICTKvrdgnnrivk-----------l 349 Physcomitrella ...
XP_002177475 140 AIPLLKKRlkns--------evnCVAFPDdGAAKRFSSLFLEMd------vEVIVCGKtrgegdvrsvv----------i 195 Phaeodactylum t...
YP_679020    144 NHRFIQQVlkit-------gndcLLISPDgGALKKIYKVSEYLgg-----iQVVECSKsrdvttgklkgf--------kv 203 Cytophaga hutch...
XP_002127878 163 ALPRLLQElnklks----enlniKIAFPDeGAHKRFRDHFDGF--------AIIRCIKkrngakrevs-----------i 219 Ciona intestinalis
Feature 1                     ### #####                        #                                 
1A4X_A        92 ipvditdqkVILVDDVLYTGRTVRAGMDALvdvgrpssIQLAVLVDRghrel---------------------------- 143 Bacillus subtilis
1G9S_A        90 ldedirgkdVLIVEDIIDSGNTLSKVREILslre-pksLAICTLLDKpsrre---------------------------- 140 Escherichia coli
NP_717587    212 fcddlsgktCLIVDDICAGGRTFIELAIKLkqkr-aqsVILIVSHYEdkasesal-----------------------re 267 Shewanella onei...
Q680A5       235 kegnpagchVVIVDDLVQSGGTLIECQKVLaahg-avkVSAYVTHGVfpksswerfth----------------kkngle 297 thale cress
YP_045679    211 ktgslagktAVITDDICDGGATFIGIAKELrklq-cehIILYVTHGIfsrgldv------------------------fd 265 Acinetobacter s...
YP_001440398 197 vdgdvkgkaVLIVDDLCDAGGTFIGSAQVLrdag-assVSLYVTHGVfskgvenl-----------------------ln 252 Enterobacter sa...
XP_001765886 350 kegdptgrhVVIVDDLVQSGGTLIECQKLLatmg-ankVSAYVTHGVfpnrswerfvhdngglvpqvvesllecdaegaa 428 Physcomitrella ...
XP_002177475 196 qdgnaegkhIVIVDDLVQTGGTLYESGKVLkeag-alsVNAFVTHGVfpneswkrfn------------------kggdr 256 Phaeodactylum t...
YP_679020    204 yaddlqgkdCLIVDDICDGGGTFIGLAEELkkkn-cgaIYLAVSHGIfsqgfek------------------------fs 258 Cytophaga hutch...
XP_002127878 220 vdgspnnchIVIVDDLIMTGGTVNECALLMkksg-assVSAYVTHAVfpadswkdflte---------------nhqegr 283 Ciona intestinalis
Feature 1                   
1A4X_A       144 -piraDYIGKN 153 Bacillus subtilis
1G9S_A       141 vnvpvEFIGFS 151 Escherichia coli
NP_717587    268 agidrLFCTDS 278 Shewanella oneidensis MR-1
Q680A5       298 eafayFWITDS 308 thale cress
YP_045679    266 glidqIFTSNS 276 Acinetobacter sp. ADP1
YP_001440398 253 ngidkLYTTTS 263 Enterobacter sakazakii ATCC BAA-894
XP_001765886 429 hgfahFWLTDS 439 Physcomitrella patens subsp. patens
XP_002177475 257 acfdkFWVTNS 267 Phaeodactylum tricornutum CCAP 1055/1
YP_679020    259 pafkrIFTTDS 269 Cytophaga hutchinsonii ATCC 33406
XP_002127878 284 aaldnFWITDS 294 Ciona intestinalis

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