6OJB


Conserved Protein Domain Family
Glyco_hydro_114
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pfam03537: Glyco_hydro_114 (this model, PSSM-Id:397552 is obsolete and has been replaced by 460963)
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Glycoside-hydrolase family GH114
This family is recognized as a glycosyl-hydrolase family, number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare enzyme. It is proposed to be TIM-barrel, the most common structure amongst the catalytic domains of glycosyl-hydrolases.
Links
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Statistics
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PSSM-Id: 397552
Aligned: 159 rows
Threshold Bit Score: 84.2602
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6OJB_A           58 KWQ--IELLyalndTS-VD-AEIYD---IDLF----IND-----KSTIAG--LQRAG--RKVICYFSAGSYENWRP---- 113  Aspergillus...
WP_013236174     56 AFY--YGV------NPpLAdLQAFDvavVEPEfvrnPAArtraaADGMH-----------QLFAYVSLGEVQPSRPyyk- 115  Herbaspiril...
CAS:CtCNB1_0691  28 aiY--YGA------KAsLSeLGLYDiavVEPD-------------HGYDPqrLRDQApgSELYAYASVAEVLPERAyfk- 85   Comamonas t...
Q1LFQ4           39 aFH--YGA------RPpVDmLQAFDvavVEPD-------------SGFDP--RSARTpnTAWFAYVSVGEVLPSRAyfk- 94   Cupriavidus...
ACR31560         87 ALY--YGA------HPpVElLSAYDaavVEPD-------------SGFDP--LAHPLphTTWFAYASVGEVLPSRAyyp- 142  Burkholderi...
jgi:Bphy_5290    51 ALY--YGK------TPpVEmLSAFDaavVEPD-------------SGFDP--LAHRLphTTWFAYASVGEVLPSRSyya- 106  Paraburkhol...
WP_015868072     26 SFAvyYG-------TGnFEkLKNFDltiVAPGty---------sADQLDE--MVKAG--KYPVVYISVGELAPGDPayfs 85   Kosmotoga
WP_015852560     21 SWAc-YYGS-----EDrTDeLSGFDllvADPGg-----------QDP-TP--LRAKG--VKVLTYISLGEVAAKGPyyee 78   Desulfovibr...
Q2G7W2           33 RWAvdYGAK-----TDpALaRQ-FDllvLEPDh-----------ARPIEA--LRGPG--AKLLGYLSLGEVEQARPyvgr 91   Novosphingo...
CBS88497         60 pWAv-YYAD-----AApLSaFQPYRllvLDSRt-----------HPPLQP--LADRG--KTLFGYLSVGEVETHRPwfgr 118  Azospirillu...

6OJB_A          114 -DKDKF-----KDsdlghdldDWPGEKWLNIS-----SanvrQIMLDRLDMARDKGCDGVDPDNVDGYdndngldLTQAD 182  Aspergillus...
WP_013236174    116 qlPPGLlrgdnAA---------WGSRV-IDQNapgwrD----FFLDKIIAPLWAQGWRGFFLDTLDSYql---faKTDAE 178  Herbaspiril...
CAS:CtCNB1_0691  86 klPAAWqmarnGA---------WRSIV-IDQTpaqwpE----FFAQQVIAPLWEKGYRGFFLDTLDSYrl---aaHFDE- 147  Comamonas t...
Q1LFQ4           95 diPQAWlsgsnDA---------WNARV-VDQAadgwpA----FYVDKVITPLWERGYRGFFLDTLDSYhl---vaKTDAD 157  Cupriavidus...
ACR31560        143 aiPKSWfagsnAT---------WASRV-IDQSqpqwpA----FFVDQVIRPLWEKGYRGFFLDTLDSYql---aaTTDEA 205  Burkholderi...
jgi:Bphy_5290   107 dlPKSWlagrnES---------WASRV-VDQSqpewpA----FFVEHVIKPLWDRGYRGFFLDTMDSWql---vaQTDDA 169  Paraburkhol...
WP_015868072     86 iNPKDLgtv----------neIWGSTR-VAASsra-----wrDIVIRRIRSQLERGFTGIFMDTVDSNp----------- 138  Kosmotoga
WP_015852560     79 aKHLNLlvrynEN---------W-DSWVVDVRrpewsE----LLFARIIPDALSSGYDGLFFDTLDSPidm--qrRDPDT 142  Desulfovibr...
Q2G7W2           92 lRKAGAliaanPN---------WPDARMVDLRhalwtS----LVVEEIIPAILAKGYDGIFFDTLDNAeam--qhADPVK 156  Novosphingo...
CBS88497        119 vKGWGIldqenPN---------WPGSFYVDVRdrrwvK----LVVEELVPAILREGFHGVFLDTLDNPphl--erTEPKR 183  Azospirillu...

6OJB_A          183 SISFVNFLANAAHAr-------------NMSIGLKNAgdiipsviKNMQWSVNEQCA----------------------- 226  Aspergillus...
WP_013236174    179 RAVQTQAMIATLREfkrrypeaklilnrGFELLPEIA--------PLTYAVAAESLYrgydagrrsygpvkdndrawlmg 250  Herbaspiril...
CAS:CtCNB1_0691 148 -AAQQDGLVRVIDTlhsrfpgiklilnrGFEIVPRVR--------DKIQMVAAESLYrgwdanlkryvevpakdrdwllq 218  Comamonas t...
Q1LFQ4          158 RARQEAGMVRVLQAikarypdakllfnrGFEILPQVH--------SLAYGVVFESLFrgwnqaqgtytevsqqdrdwlln 229  Cupriavidus...
ACR31560        206 RARQQAGLVAVIRAirarypqaklilnrGFEIMPQVH--------DQIYAVAFESLYhgwnqaqrryvavpqadrdwllg 277  Burkholderi...
jgi:Bphy_5290   170 RARQMEGLANVIRAikahypdaklifnrGFEILPEVH--------DLVYAVAFESLYrgwdqtrqrytqvpeqdrtwlla 241  Paraburkhol...
WP_015868072    139 --DGVGAMADFIREirdtfpdmiiiqngAFDRLEKTG--------KYIDFVLWESFAttfnfntaryekafiddllikrv 208  Kosmotoga
WP_015852560    143 YKGTERSCVALVRAirekfpkmllcqnrGFEIVRRTA--------PYINYLLIEGLSssmdletstrkdvseadrsflvg 214  Desulfovibr...
Q2G7W2          157 MAGMVDAAAALVRAirarfppitlmmnrGYALLPAVA--------PHVDVVLGEAMAskwdfakkayvrttpsdwewqaa 228  Novosphingo...
CBS88497        184 WRGMTDAAAALVRAirrnwpdigltqnrAYEILPQTA--------PLLTHVLGESVYagwdfaarrphrqsaedyrfqve 255  Azospirillu...

6OJB_A          227 -----QYnecdtyavfPQNGKPVFHIEYpkgdktnndlsvtaSQK---NAACD----FAGSANFSTVIKNMNL-NN 289  Aspergillus fum...
WP_013236174    251 qmqtaRE----------RYHLPVIAIDYv------------dPQQsgaRALARetaqKISADGFIPWVADGGLvSM 304  Herbaspirillum ...
CAS:CtCNB1_0691 219 qlqtiRE----------RDKLPVLAIDYv------------aPHD---RDTTRataqRIAQLGIIAWVSDAGLqtl 269  Comamonas thioo...
Q1LFQ4          230 qarivRE----------QYGLPVISIDYc------------pPTD---AQCRRdtarRIGALGITPYVTDSGLqTv 280  Cupriavidus met...
ACR31560        278 qartiRA----------QYGLPVISIDYc------------aPGD---SACSRdaieRIRADGLVPFVTDGALatm 328  Burkholderia gl...
jgi:Bphy_5290   242 qaktiRE----------QYHLPVISIDYc------------aPAD---RACRQdtvaKIRAQDIVPYVTDGALatl 292  Paraburkholderi...
WP_015868072    209 qqlskKD------------GFGVLSLSYa------------aPED---KELRTfarnFARKCGFIPYVSTLYLerv 257  Kosmotoga
WP_015852560    215 kansaLK---------ANPKLVVLTLDYv------------pAGE---KLEISkaydFSRSLGFIPYVSTPALnev 266  Desulfovibrio s...
Q2G7W2          229 rlreaKL---------ANPALRLTVLDYw------------dEAD---RDTVAalyhCEREAGFHPYVATLALdri 280  Novosphingobium...
CBS88497        256 alkaaGA---------SNPRLGLLTLDYw------------dPAD---TAGVRaiydLQRANGFSPYVSTVELdrl 307  Azospirillum li...
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