1K83


Conserved Protein Domain Family
RPB9

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COG1594: RPB9 (this model, PSSM-Id:224510 is obsolete and has been replaced by 441202)
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DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
linked to 3D-structure
Statistics
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PSSM-Id: 224510
Aligned: 29 rows
Threshold Bit Score: 63.2439
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1K83_I     3 TFRFCRDCNNMLYPREDKENNr-------lLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGsD---------- 65  baker's yeast
19173009   1 -MLFCPLCSSMLVVKKQAIGN---------ELSCKMCGYLYAIS----EEISRTVGMTPKKSEGFVD------------- 53  Encephalitozoon cun...
19074096 117 NISDCNNASAALLARQITIEIfgrnpsdiaKLIRSKCLNLKDKNNPALCRRVYNGDISPSRYVDMSSEeMkseslknee- 195 Encephalitozoon cun...
19173459   1 --MFCI-CGTLVYVRS--DSS---------RVECPRCKRENSVA--MIKPTYTEVKVQRDLHIEAV-------------- 50  Encephalitozoon cun...
19074940   2 SDRFCKECNNLLYPKED-DNTl--------FLACKNCEHIQEAKS---HRLYVKNFRPKHASIELYAR------------ 57  Encephalitozoon cun...
1351227  145 LVIDSDESSSLIIAKAKEIDAqv------lARAAGKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEiTpqrlstmtsa 218 fission yeast
3334318    1 -MQFCPTCGNHLIVAVDEEGRn--------AFDCRTCPYHFPIS-TFLYSRHEFAQKEVDDVLGGEEAfE---------- 60  fission yeast
15214253   3 NFQYCIECNNMLYPREDKVDRv-------lRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDAStD---------- 65  fission yeast
9297043    6 SLIFCSECGNLLESTTAQWTT---------CDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVqV---------- 66  fission yeast
1729915  161 AKESEHPPQSILHTAKAIESEmn------kVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDiTpeflatcdak 234 baker's yeast
1K83_I    66 --------------------PTLP-----RS--DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 baker's yeast
19173009  54 --------------------EDESlkfvtK---CGKRCECGSEEVSFVELQTRSADEPMTIFYKCIRCKKVWKE- 104 Encephalitozoon cuniculi
19074096 196 ------------vkmievslYECQiptqkAEtdIFKCSKCGERKCSYRQLQTRSGDEPMTTFVTC-ECGNKWRFC 257 Encephalitozoon cuniculi
19173459  51 --------------------DVQGakikhR------CPACGAEEMMYNTAQLRSTDEGQTVFYSC-KCGYRQTVQ 98  Encephalitozoon cuniculi
19074940  58 --------------------DLVQdptlpSV--KINCGNCGFNKGLYFQPRGGEEDVALSIFYLCCRCYHLWT-- 108 Encephalitozoon cuniculi
1351227  219 elasedrrkedakleqenlfHAQGakpqkAVtdLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKFS 293 fission yeast
3334318   61 --------------------SNQQ-----TEvtCEN-TKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109 fission yeast
15214253  66 --------------------PTLP-----RS--DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEEQ 113 fission yeast
9297043   67 --------------------ESQKe---eAAtiEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118 fission yeast
1729915  235 dlapaplkqkieeiakqnlyNAQGatierSVtdRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS 309 baker's yeast
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