2BNE,1YBD,1Z9D,2A1F


Conserved Protein Domain Family
AAK_UMPK-PyrH-Ec

?
cd04254: AAK_UMPK-PyrH-Ec 
Click on image for an interactive view with Cn3D
UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Statistics
?
PSSM-Id: 239787
Aligned: 51 rows
Threshold Bit Score: 255.878
Created: 30-Sep-2005
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:uridine monophosphate binding site [chemical binding site]
Evidence:
  • Structure:2BNE; E. coli UMP kinase in complex with UMP.
    View structure with Cn3D
  • Comment:defined by 3.5 Angstrom contacts

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      ###   ##              #  ##      
2BNE_B       10 KRILLKLSGEALQGte-gfGIDASILDRMAQEIKELVelGIQVGVVIGGGNLFRGAGLAKAGmn-rvVGDHMGMLATVMN 87  Escherichia coli
ZP_00392081   5 KRVLIKLSGGALADqt-gnSFNSKRLEHIANEILSIVdlGIEVSIVIGGGNIFRGHLAEEWGid-rvEADNIGTLGTIIN 82  Bacillus anthrac...
13638411     10 QRIIIKLSGAGLTKen-sqPFSNDFFETIINQLKVLKe-SYQVGIVIGGGNIIRGNNCQEFNia-eyHGHQLGIIATVVN 86  Mycoplasma genit...
NP_852871    10 PNIIIKISGASLQDknsndCYSYQRINSLADQLKSLAk-KYNIGLIVGGGNIFRGKLAKDFGve-inKADYIGMLATVIN 87  Mycoplasma galli...
NP_758340     4 ELVILKISGASLKGkn--dIIDLDFLREIGRQIKVLSn-NYKVAIVLGGGNIWRGNIAKEIGmq-ryKADQMGMLATVMN 79  Mycoplasma penet...
NP_078351     4 QRIVIKISGACLKQnd-ssIIDFIKINDLAEQIEKISk-KYIVSIVLGGGNIWRGSIAKELDmd-rnLADNMGMMATIIN 80  Ureaplasma parvu...
YP_053798     6 STVLLKLSGEALKSen--eIYNKEKLEDIAKQIVELAknGLKLGIVIGGGNIWRGKLGTDIDmp-qiNADYMGMLATVMN 82  Mesoplasma floru...
YP_015751     8 KRILLKLSGEGLSNkkkslLIDYEIVKNIAIQLQKIHkqGYEVAIVVGGGNFWRGESASKNGip-rtRADYIGMLATTMN 86  Mycoplasma mobil...
ZP_00544750  12 SRVLLKVSGEALMGkk-gfGCDIEVLDKLSHDLKEVHsfGVQLCLVVGGGNIFRGASASASFgferaSNDYIGMLATMMN 90  Ehrlichia chaffe...
YP_506810     2 RRVLLKISGERLAArg-vsVHDAEVIGMLARGIKRVHemGIQVCLVIGGGNIYRGSSGIPNIdr--aTGDYMGMLATVIN 78  Neorickettsia se...
Feature 1                                                           # ## ###                    
2BNE_B       88 GLAMRDALHr-aYVNARLMSAIpl-ngVCDSYSwAEAISLLRnnRVVILSAGTGNPFFTTDSAACLRGIEIEANvVLKAT 165 Escherichia coli
ZP_00392081  83 SLMLRGVLTsktNKEVRVMTSIpf-naVAEPYIrLRAVHHLDngYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDaILVAK 161 Bacillus anthrac...
13638411     87 GYFLKAKLDa-hNLKSALLSAIscpslAVQILSqQTIDKAFEenDFVIFSGGTGNPYFSTDTALALRAVQTKAVaILIGK 165 Mycoplasma genit...
NP_852871    88 STLLESKLQs-lGLKTKVLSALev-kgLTNEINpKSLAEVFSdcQIAFFSGGTGNSHFTTDTATVLRAIQINAQlVLIGK 165 Mycoplasma galli...
NP_758340    80 SLALQSLLTn-iNVKSRIFSTIem-ekIADSYIiRNLEESLNnnEIAILSCGTGRPYFTTDTGVAVSAAELGASyIMMGK 157 Mycoplasma penet...
NP_078351    81 GLALENALNh-lNVNTIVLSAIkc-dkLVHESSaNNIKKAIEkeQVMIFVAGTGFPYFTTDSCAAIRAAETESSiILMGK 158 Ureaplasma parvu...
YP_053798    83 GLALESTIKrlgYDKVNVYSSLpi-etVTDDYNfKRARLKMNegYISIFVGGTGFSYFTTDTNSVIRAIEIGADaVLMAK 161 Mesoplasma floru...
YP_015751    87 ALALQSGFEs-vGLKARVQSSLsidgkVAENYItEKAKHYLSngEIVIFAGGTGRPFFTTDTAATLVASEMQCDvLLMAK 165 Mycoplasma mobil...
ZP_00544750  91 ALSLQNALEk-vNVQSRVLSAIpi-taVCETYIrRRAIRHLEkgRVVICAAGVGSPFFTTDTAAALRGIEMGCDaIFKGT 168 Ehrlichia chaffe...
YP_506810    79 ALALQGAINn-lGVVSRVQSAIpm-rsICEPYVrQKAISHMEknRIVIFAAGTGNPFFTTDTAAVLRSVEMGCDvMLKGT 156 Neorickettsia se...
Feature 1                                                                                       
2BNE_B      166 -KVDGVFTADPAkdpTATMYEQLTY----SEVLEKELKVMDLAAFTLARDHKLPIRVFNMnkpgALRRVVMGekEGTLIT 240 Escherichia coli
ZP_00392081 162 qGVDGVFTSDPKhnkSAKMYRKLNY----NDVVRQNIQVMDQAALLLARDYNLPAHVFNFdepgVMRRICLGehVGTLIN 237 Bacillus anthrac...
13638411    166 nGVDGVYTADPKkdkNATFLPTLNY----DHAIKNDLKIMDITAFTMCKENNLKIIIFNInaenALLDALNKkgRFTIIE 241 Mycoplasma genit...
NP_852871   166 dGVDGVYTDDPKknkKAKFIEQITY----QQALNDQLRVMDLTAFSLAKDHNLKLLIFNIeaeqSIIKTIENknKHTKIT 241 Mycoplasma galli...
NP_758340   158 nNVDGVYDSDPNknpNAKFYKHLTY----SKAIELGLEVMDITAATICKQSNIKTIVFKMneknGILNAFENksKFTLVS 233 Mycoplasma penet...
NP_078351   159 nGVDGVYDSDPKinpNAQFYEHITF----NMALTQNLKVMDATALALCQENNINLLVFNIdkpnAIVDVLEKknKYTIVS 234 Ureaplasma parvu...
YP_053798   162 nGVKGVYDSDPNlnpNAKFYKKLTH----REIAENQLRVMDLTAATLAKDAKLPIEVFDMqgqnNIIKVMEGslESTIIE 237 Mesoplasma floru...
YP_015751   166 nGVNGVYDADPKvspSAIKFDSLSYdellHIVLTNGLKIMDSTSVTMAKENNIKILVFDIqekdSILKVLEGnaEHTKVE 245 Mycoplasma mobil...
ZP_00544750 169 -QVDGVYSADPKknaDAVRYDKISY----RDLLSLDLKIMDVAAVSLAREHSVPIIVFNLgqpgSFADIIRGdgLYTTIY 243 Ehrlichia chaffe...
YP_506810   157 -LVDGIYSDDPRtniNAERITKLSY----TDVLSKKLRVLDSSAVSIARDNGMPVVIFSLdsemAFYEVINKqgNYSTIE 231 Neorickettsia se...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap