3HD7,3RK2,1SFC,1L4A


Conserved Protein Domain Family
SNARE_SNAP25C

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cd15885: SNARE_SNAP25C 
Click on image for an interactive view with Cn3D
C-terminal SNARE motif of SNAP25
C-terminal SNARE motifs of SNAP25, a member of the Qb/Qc subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins. SNAP25 interacts with Syntaxin-1 (Qa) and the R-SNARE VAMP2 (also called synaptobrevin-2). The complex plays a role in transport of secretory granule from trans-Golgi network to the plasma membrane. Qb/Qc SNAREs consist of 2 coiled-coil helices (called SNARE motifs, one belonging to the Qb subgroup and one belonging to the Qc subgroup), which mediate the interactions with other SNARE proteins, and a transmembrane domain. In general, the SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. Other members of the Qb/Qc SNAREs are SNAP23, SNAP29, SNAP47 and SEC9.
Statistics
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PSSM-Id: 277238
Aligned: 23 rows
Threshold Bit Score: 90.4869
Created: 13-Apr-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 35 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:3RK2; Homo sapiens SNARE complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ##  ###### ##  ## ### ##  ## ## ###### ##  #  #   #  #  #
3HD7_D         7 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 65  Norway rat
3RK2_D         5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63  human
548941       151 EDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNEARIAVANQRAHQ 209 fruit fly
AAC83577     149 EDEMDENLTQVSGIVGNLRHMAIDMQSEIGAQNSQVGRITSKAESNEGRINSADKRAKN 207 purple sea urchin
NP_001123033 172 EDEMDENVQQVSTMVGNLRNMAIDMSTEVSNQNRQLDRIHDKAQSNEVRVESANKRAKN 230 nematode
XP_002613470 131 EDEMNENLGQVNSLIGNLKHMAVDMGTEIEGQNRQIDRIKSKSDYNEIRVKSANQRATK 189 Florida lancelet
XP_001635030 125 EDEMDENLGQVSNIIGNLKSMAVDMGQELETQNRQLDRINAKAESNDTRIHVANKRARD 183 starlet sea anemone
AEO36761     152 ETEMEDNMVQVSTMIGNLRNMAIDMGSEIESQNRQIDRINQKGTSNVVRVKGAQERAAK 210 Amblyomma maculatum
EFX73410     148 EGEMEENMTQVSTMIGNLRNMAIDMGSEIENQNRQLDRINAKGESNENRIGIANQRAGQ 206 common water flea
CBY32364     141 EDEMEENLGQVSSCITNLKHMALDMNNEINSQNVTVERLNAKVHNNNDRIKAANQRAIT 199 Oikopleura dioica

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