2YBB,6CFW,6NBY


Conserved Protein Domain Family
Complex1_30kDa

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pfam00329: Complex1_30kDa (this model, PSSM-Id:395260 is obsolete and has been replaced by 459763)
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Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Statistics
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PSSM-Id: 395260
Aligned: 586 rows
Threshold Bit Score: 53.636
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YBB_5           27 VVLPRERFKEEMAHYKA------------------------MGFNFLADIV-GLDYLtyPdprPERFAVVYELvslpgwk 81  Thermus ther...
jgi:Desmer_1167  26 vSLPPHDFSDLLTYCLAvkp-------------------rpIWLTHV-----VNDerql-----gngfSIYLVlhfpgkd 76  Desulfosporo...
Q24ST8           37 VWLKPACLPEVMEQLWLkvp------------------srpLLMTHV-----GNDersl-----ghgfVIYLLlhfpg-d 87  Desulfitobac...
WP_015263364     34 VLLDSQCLPEVIQHIWVeat------------------trpMLLTHV-----GNDerel-----ghdfALYLLfhfpg-d 84  Desulfitobac...
Q609T9           34 cPVIPEDWGDAAEAAAAqgcrwag----------gwgeargESWVVNALLEkSGD----------------YLl------ 81  Methylococcu...
WP_015282015     35 lrLAPPDWGTAAQIAAGlglrwaglw------gdpqvetgeETLVVQACLVrDGD----------------YLv------ 86  Thioflavicoc...
jgi:Thivi_2909   72 LVLDPEDWAAAAKLAAGmgmrhaglwsdpletevseaeieePCLRVRACLEqAGD----------------YLv------ 129 Thiocystis v...
jgi:Slit_2560    22 gEIGPDDLHEICRQVHDg----------------------gGRLVALW----GSDTRq-Qd-rGFQLHVLLLNe------ 67  Sideroxydans...
BAL23802         22 ADVDAAQWSALALAVAEe----------------------kGRLVSLW----GSDERa-Tg-dGFTVSAAYATa------ 67  Azoarcus sp....
Q13II9           26 ARVDAHTWTRTAGTVRDa----------------------gGRLISVWGTEeAADR--------FVISAAYALe------ 69  Paraburkhold...
2YBB_5           82 dgdgSRFF-VRV--Yv-Pe-eDPrLPTVTDLWGSANFLEREVYDLFGIVFE--------GHPDLRKILT----PED-Leg 143 Thermus ther...
jgi:Desmer_1167  77 fsltFVAKgITVe-----------FPSLTSILPALNWSEREAQDLFGLLAD--------GHPDPRPLVLhpgwPKGfY-- 135 Desulfosporo...
Q24ST8           88 ftltLGARgIEKs-----------FPSLTLLCPALNWPEREVRDLLGLHPD--------GHPDPRPLVLhpgwTGGfY-- 146 Desulfitobac...
WP_015263364     85 ftltLVARgIKDs-----------YPSLTILCPALNWAERELKDLMGLTPE--------GHPDTRSLVLhpgwPADfH-- 143 Desulfitobac...
Q609T9           82 ---------LRTvl-ppG---RTgLPSHTPHFPGAARPERHTRDLLGLKFI--------GHPDDRRWVRhqawGEReF-- 138 Methylococcu...
WP_015282015     87 ---------LATev-saA---KPeLASHTPFFAGADRLERHAQDLLGLRFT--------DHPDPRRWTRhqawPEDaH-- 143 Thioflavicoc...
jgi:Thivi_2909  130 ---------IETdv-plN---RPlLGSQTPAYPGLDRLERHAHDLTGVVFTghpfdsaqDRPDERRWTRhqawPADrF-- 194 Thiocystis v...
jgi:Slit_2560    68 ----TGMVcLNVql-saE---QPvYPDISQIFPAASRMQRATYDMLGIYAQ--------EGHDHRKWVRhgawHSGsF-- 129 Sideroxydans...
BAL23802         68 ----DGLLwAKLglD--Pa--RPtYPDIARLFAPAIRMQRAARDLVGIEPE--------DADDMRPWLRhgawPADyF-- 129 Azoarcus sp....
Q13II9           70 ----DGILwLQLpaDdrHesgGYgYPDLSAVFPCATRMQRAVYDLLGLRAI--------GAEDTRPWLNhgnwAADyH-- 135 Paraburkhold...
2YBB_5          144 hPLRKDYPLGETP 156 Thermus thermophilus HB8
jgi:Desmer_1167 136 -PLRKDFQAEQES 147 Desulfosporosinus meridiei DSM 13257
Q24ST8          147 -PLRKPCPETPas 158 Desulfitobacterium hafniense Y51
WP_015263364    144 -PLRKSKPRTTGe 155 Desulfitobacterium dichloroeliminans
Q609T9          139 -PLRPDFPLAGQP 150 Methylococcus capsulatus
WP_015282015    144 -PLRPGFAPAERR 155 Thioflavicoccus mobilis
jgi:Thivi_2909  195 -PLRHDFPLSGET 206 Thiocystis violascens DSM 198
jgi:Slit_2560   130 -PLRKDFDAAASR 141 Sideroxydans lithotrophicus ES-1
BAL23802        130 -PLRFESTGEERF 141 Azoarcus sp. KH32C
Q13II9          136 -PLRKRSSGTERF 147 Paraburkholderia xenovorans LB400
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