3QM4,2F9Q


Conserved Protein Domain Family
CYP2D

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cd20663: CYP2D 
Click on image for an interactive view with Cn3D
cytochrome P450 family 2, subfamily D
Members of CYP2D are present in mammals, birds, reptiles, and amphibians. The hominin CYP2D subfamily consists of a functional CYP2D6 and two paralogs, CYP2D7 and CYP2D8, that are often not functional in some species. Human CYP2D6 has a high affinity for alkaloids and can detoxify them. It is also responsible for metabolizing about 25% of commonly used drugs, such as antidepressants, beta-blockers, and antiarrhythmics. The CYP2D subfamily belongs to the large cytochrome P450 (P450, CYP) superfamily of heme-containing proteins that catalyze a variety of oxidative reactions of a large number of structurally different endogenous and exogenous compounds in organisms from all major domains of life. CYPs bind their diverse ligands in a buried, hydrophobic active site, which is accessed through a substrate access channel formed by two flexible helices and their connecting loop.
Statistics
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PSSM-Id: 410756
Aligned: 21 rows
Threshold Bit Score: 818.552
Created: 1-Apr-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindingchemical
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:3QM4: Human cytochrome P450 2D6 binds heme; contacts at 4A
  • Structure:2F9Q: Human cytochrome P450 2D6 binds heme; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                         #                 ##       #   #            
3QM4_A     43 FGDVFSLQlawtPVVVLNgLAAVREALVTHGEDTADRPPVPITQILGfgprSQGVFLARyGPAWREQRRFSVSTLRNLgl 122 human
2F9Q_A     43 FGDVFSLQlawtPVVVLNgLAAVREALVTHGEDTADRPPVPITQILGfgprSQGVFLARyGPAWREQRRFSVSTLRNLgl 122 human
AAH77934   74 YGDVMSLQvfwkPVVVLNgLEVMKEALIQKSEDTADRPEFHVLEILGfvgnNKAVVLANyGQSWKDLRRFTLSTLRDFgm 153 African clawed frog
P10635     65 FGDVFSLQlawtPVVVLNgLAAVREALVTHGEDTADRPPVPITQILGfgprSQGVFLARyGPAWREQRRFSVSTLRNLgl 144 human
Q29488     65 FGNVFSLQlawtPVVVLNgLAAVREALVTCGEDTADRPPVPINQVLGfgprSQGVFLARyGPAWREQRRFSVSTLRNLgl 144 Macaca fascicularis
O18992     65 FGDVFSLQlawtPVVVLNgLEAVREALVTRGEDTADRPPVPITEMLGfgphSQGLFLARyGPAWREQRRFSVSTLRNLgl 144 white-tufted-ear m...
Q01361     68 FGNVFSLQqvwtPVVVLNgLAAVREALVYRSQDTADRPPPAVYEHLGygprAEGVILARyGDAWREQRRFSLTTLRNFgl 147 cattle
O46658     68 FGDVFSLQqiwrPVVVLNgLAAVREALVSHSHETSDRPPVFILEHLGygprSEGVILARyGKAWREQRRFSVSTLRNFgl 147 pig
Q29473     68 FGNVFSLElawtPVVVLNgLEAVREALVHRSEDTADRPPMPIYDHLGlgpeSQGLFLARyGRAWREQRRFSLSTLRNFgl 147 dog
Q64680     68 FGDLFSLQlafeSVVVLNgLPALREALVKYSEDTADRPPLHFNDQSGfgprSQGVVLARyGPAWRQQRRFSVSTFRHFgl 147 Norway rat
Feature 1                                                                                     
3QM4_A    123 gkksLEQWVTEEAACLCAAFANHsgrpfrPNGLLDKAVSNVIASLTCGRRFEYddPRFLRLLDLAQEGLKEESGflrevl 202 human
2F9Q_A    123 gkksLEQWVTEEAACLCAAFANHsgrpfrPNGLLDKAVSNVIASLTCGRRFEYddPRFLRLLDLAQEGLKEESGflrevl 202 human
AAH77934  154 gkksLEERVREEAGYLCAAFQSEqgrpfdPHILLNTAVSNVICSIIFGERFEYddHTFQKLLCLIEESVKAESGavpqii 233 African clawed frog
P10635    145 gkksLEQWVTEEAACLCAAFANHsgrpfrPNGLLDKAVSNVIASLTCGRRFEYddPRFLRLLDLAQEGLKEESGflrevl 224 human
Q29488    145 gkksLEQWVTEEAACLCAAFTDQagrpfrPNSLLDKAVSNVIASLTYGRRFEYddPRFLRLFDLTHEALKEESGflrevl 224 Macaca fascicularis
O18992    145 gkksLEQWVTEEATYLCAAFADHagrpfrPNGLLDKAVSNVIASLTCRRRFEYndPCLLRLLDLTMEGLKEESGllrevl 224 white-tufted-ear m...
Q01361    148 gkksLEQWVTEEASCLCAAFADQagrpfsPMDLLNKAVSNVIASLTFGCRFEYndPRIIKLLDLTEDGLKEEFNlvrkvv 227 cattle
O46658    148 gkksLEEWVTQEASCLCAAFADQagrpfsPNNLLNKAVSNVIASLTFARRFEYndPRMLKLLDLVLEGLKEEVGlmrqvl 227 pig
Q29473    148 grksLEQWVTEEASCLCAAFAEQagrpfgPGALLNKAVSNVISSLTYGRRFEYddPRLLQLLELTQQALKQDSGflreal 227 dog
Q64680    148 gkksLEQWVTEEARCLCAAFADHsgfpfsPNTLLDKAVCNVIASLLFACRFEYndPRFIRLLDLLKDTLEEESGflpmll 227 Norway rat
Feature 1                                                                                  #  
3QM4_A    203 navpvllhipALAGKVLRFQKAFLTQLDELLTEHrmtwdpaqpPRDLTEAFLAEMekakgnpessFNDENLRIVVADLFS 282 human
2F9Q_A    203 navpvdrhipALAGKVLRFQKAFLTQLDELLTEHrmtwdpaqpPRDLTEAFLAEMekakgnpessFNDENLRIVVADLFS 282 human
AAH77934  234 aslpwsskipGLAKMFFQPRIRMLKYLQEIIKDHqqtw-dsghTRDFIDAFMLEMekakgvkdsnFNEQNLLLTTADLFS 312 African clawed frog
P10635    225 navpvllhipALAGKVLRFQKAFLTQLDELLTEHrmtwdpaqpPRDLTEAFLAEMekakgnpessFNDENLRIVVADLFS 304 human
Q29488    225 naiplllripGLAGKVLRSQKAFLTQLDELLTEHrmtwdpaqpPRDLTEAFLAEMekakgnpessFNEENLRMVVADLFS 304 Macaca fascicularis
O18992    225 naipvllripGLAGKVLRSQKAFLAQLDELLTEHrmtwdpaqpPRDLTEAFLAEMektkgnpessFNDENLHLVVADLFS 304 white-tufted-ear m...
Q01361    228 eavpvllsipGLAARVFPAQKAFMALIDELIAEQkmtrdptqpPRHLTDAFLDEVkeakgnpessFNDENLRLVVADLFS 307 cattle
O46658    228 eampvlrhipGLCAKLFPRQKAFLVMIDELITEHkmtrdlaqpPRDLTDAFLDEMkeakgnpessFNDENLRLVVAHLFS 307 pig
Q29473    228 nsipvllhipGLASKVFSAQKAIITLTNEMIQEHrktrdptqpPRHLIDAFVDEIekakgnpktsFNEENLCMVTSDLFI 307 dog
Q64680    228 nvfpmllhipGLLGKVFSGKKAFVAMLDELLTEHkvtwdpaqpPRDLTDAFLAEVekakgnpessFNDENLRVVVADLFM 307 Norway rat
Feature 1     ##  ##  #                                                  #         # #        
3QM4_A    283 AGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGqvrrpemgdqahMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEV 362 human
2F9Q_A    283 AGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGqvrrpemgdqahMPYTTAVIHEVQRFGDIVPLGMTHMTSRDIEV 362 human
AAH77934  313 AGSETTNTTLRWGLLFMLLYPNVQRKVHEEIDHVIGrtrkptmgdvlqMPYTNAVIHEIQRYVDIVPLSVPHMTYRDTHI 392 African clawed frog
P10635    305 AGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGqvrrpemgdqahMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEV 384 human
Q29488    305 AGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGqvrrpemgdqarMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEL 384 Macaca fascicularis
O18992    305 AGMVTTSITLAWGLLLMILHPDVQRRVQQEIDDVIGrvrrpemgdqtyMPYTTAVIHEVQRFADIVPLGVTHMTSRDIEV 384 white-tufted-ear m...
Q01361    308 AGMVTTSTTLAWALLLMILHPDVQRRVQQEIDEVIGqvrrpemgdqalMPFTVAVVHEVQRFADIVPLGLPHMTSRDIEV 387 cattle
O46658    308 AGMITTSTTLAWALLLMILHPDVQRRVQQEIDEVIGhvrqpeikdqalMPFTLAVLHEVQRFGDIVPLGVAHMTSCDIEV 387 pig
Q29473    308 AGMVSTSITLTWALLLMILHPDVQRRVQQEIDEVIGreqlpemgdqtrMPFTVAVIHEVQRFGDIVPLGVPHMTSRDTEV 387 dog
Q64680    308 AGMVTTSTTLTWALLFMILRPDVQCRVQQEIDEVIGqvrrpemadqarMPFTNAVIHEVQRFADILPLGVPHKTSRDIEV 387 Norway rat
Feature 1                   #                                   ###   # ###  #                
3QM4_A    363 QGFRIPKGTTLITNLSSVLkDEAVWeKPFRFHPEHFldaqghFVKPEafLPFSAGRRACLGEPLARMELFLFFTSLLQHF 442 human
2F9Q_A    363 QGFRIPKGTTLITNLSSVLkDEAVWeKPFRFHPEHFldaqghFVKPEafLPFSAGRRACLGEPLARMELFLFFTSLLQHF 442 human
AAH77934  393 QGFFIPKGVTIMTNLSSVLkDEKAWeKPFQFYPEHFldrdgkFVKREafMAFSAGRRVCLGEQLARMELFLFFTTLLQRF 472 African clawed frog
P10635    385 QGFRIPKGTTLITNLSSVLkDEAVWeKPFRFHPEHFldaqghFVKPEafLPFSAGRRACLGEPLARMELFLFFTSLLQHF 464 human
Q29488    385 QGFLIPKGTTLFTNLSSVLkDEAVWeKPFRFHPEHFldaqghFVKPEafLPFSAGRRACLGEPLARMELFLFFTCLLQRF 464 Macaca fascicularis
O18992    385 QGFLIPKGTTLFTNLSSVLkDEANWeKPFRFHPEHFldaqgrFVKPEafLPFSAGRRACLGEPLARMELFLFFTCLLQRF 464 white-tufted-ear m...
Q01361    388 QGFHIPKGTTLITNLSSVLkDETVWeKPFRFHPEHFldaqgrFVKQEafIPFSAGRRACLGEPLARMELFLFFTSLLQHF 467 cattle
O46658    388 QGFLIPKGTTLITNLTSVLkDETVWkKPFRFYPEHFldaqgrFTKQEafMPFSAGRRSCLGEPLARMELFLFFTTLLQAF 467 pig
Q29473    388 QGFLIPKGTTLITNLSSVLkDEKVWkKPFRFYPEHFldaqghFVKHEafMPFSAGRRVCLGEPLARMELFLFFTCLLQRF 467 dog
Q64680    388 QGFLIPKGTTLIINLSSVLkDETVWeKPLRFHPEHFldaqgnFVKHEafMPFSAGRRACLGEPLARMELFLFFTCLLQRF 467 Norway rat
Feature 1                                 
3QM4_A    443 SfsvptgqPRPSHHGVFaFLVSPSPYEL 470 human
2F9Q_A    443 SfsvptgqPRPSHHGVFaFLVSPSPYEL 470 human
AAH77934  473 SfqipngePSPREDPVFvFLQLPHDYKM 500 African clawed frog
P10635    465 SfsvptgqPRPSHHGVFaFLVSPSPYEL 492 human
Q29488    465 SfsvpagqPRPSHHGVFaFLVTPSPYEL 492 Macaca fascicularis
O18992    465 SfsvpagqPRPSPHGVFaFLVTPSPYEL 492 white-tufted-ear marmoset
Q01361    468 SfsvpagqPRPSEHGVFaFLVTPAPYQL 495 cattle
O46658    468 SfsvptgqPCPSDHGVFaFLLFPSPYQL 495 pig
Q29473    468 SfsvpagqPRPSDHGVFtFLKVPAPFQL 495 dog
Q64680    468 SfsvpagqPRPSNYGVFgALTTPRPYQL 495 Norway rat

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