Conserved Protein Domain Family
RNase_H_2

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pfam13482: RNase_H_2 (this model, PSSM-Id:404380 is obsolete and has been replaced by 433246)
RNase_H superfamily
Statistics
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PSSM-Id: 404380
Aligned: 74 rows
Threshold Bit Score: 97.6888
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q1D5Q9         197 LFLDTETTgLAGGTGTVpFLVGLAWFEG-RSLKvhqlfLRR-LGEEAP-MLRSLAER-----------MAAS--SC---- 256  Myxococcus x...
EDK33594        32 IFFDLEHY-IYKKPICI-GVFGCCFYDYkNEVLk----VTQ-YMIENK-KDTKLILRlakey-fenmiKENK--KY---- 96   Clostridium ...
Q97KD2          31 LFFDLEHY-VYKKPICI-GVFGCAYFDE-KSGEl---nTTQ-YMIENK-SDSERILKiaeeyflkaktELKK--DY---- 96   Clostridium ...
WP_012161636   287 IFIDFEg--LND-ENYT-YLIGLCITEK-DKNRf----LSF-WADSQA-QEVSIFLSmi-------eiISPL--TN---- 342  Acaryochlori...
Q01TS6         290 IYLDVESN---PDEGFV-YLVGMIVRDG-SGETr----HSF-WADTKD-QEREIFDQlv-------avVSRY--EK---- 345  Candidatus S...
WP_011993706   224 IYLDIESY---TPFDFD-YLFGVLE-NG-RYIPf----LAT-DPSKERyTFENIVKY-----------LEKRqqPI---- 277  Fervidobacte...
jgi:Tlet_0528  241 VFLDIESH---PLKDFD-YLFGVL-VDD-KYIPy----LCE-SIEDEY-RVFGELLD-----------FLDR--TSgpiy 295  Pseudothermo...
WP_012707163   198 IFFDIEGDpFIGEHGLE-YLFGYHYRNEaGDYVr----LAN-WAFDRN-TEKAIFERfmdf---vtsrREQF--PD---- 261  Sinorhizobiu...
jgi:Mmc1_1283  316 LFFDMEGDpLYP-DGLE-YLFGFYFTES-GQPV-----FKPfWAHDHK-EEKRALQEvmdf---lvthLRAH--PD---- 377  Magnetococcu...
Q7VYJ1         321 MFFDMEGDpLED-GGLE-YLFGLYVIDD-GAERf----VPF-WAHDRR-QEKQAFEAfmdf---vaerLRRH--PD---- 382  Bordetella p...
Q1D5Q9         257 -LVTFNGKSfDWPLLR--TRFv--lNRVPAPV----------EL--PHLDL-LH-CARR-VFK----HRgagTRLVHLED 312  Myxococcus x...
EDK33594        97 -IVTFSGNN-DFTVIN--YLF----EKYNMEFnni-----edYF--ISVDL-QK-QYEK-EIH----KS---IGLKALEK 151  Clostridium ...
Q97KD2          97 -IVTFSGNN-DFTVIN--YLFkksnINMEVNK----------EF--ISIDL-QK-EYEK-VTK----RC---VGLKNLEK 150  Clostridium ...
WP_012161636   343 -FTAYYYGSyEIRALK--KLSkkldDS----YaniinrlienSV--NILSI-FNsNIYP-PTY----TN----SLKDIAK 403  Acaryochlori...
Q01TS6         346 -PAVFCYGGyERSFIQrmRRLa--kRKRPIDKll------aaLV--NTLSIiYT-HFYF-PTY----SN----GLKEVAG 404  Candidatus S...
WP_011993706   278 -YHFHNYEImRFKKLS--KKY-----GVNLSK----------ELlsRFVDV-YK-IYAG-HVAlp-iPS---YSLKSIAR 332  Fervidobacte...
jgi:Tlet_0528  296 hYCPYEPSR--FSSLV--NRWsd-lGTVYRKI----------KT--RFVDV-YQ-ILVK-HIAlplfTY----SLKSVAR 351  Pseudothermo...
WP_012707163   262 -LHIYHYAPyEPATLK--RLM----GRYATREsevd--rllrGN--VLVDL-YT-VVRN-AVRas-vES---YSIKKLEA 323  Sinorhizobiu...
jgi:Mmc1_1283  378 -AHIYHYNHyEETALK--RLA----SQYATREaevd--dllrGR--KLVDL-FK-VVREaIRVse-pKY----SIKNLEA 439  Magnetococcu...
Q7VYJ1         383 -AHIYHYAPyEATALK--KLM----SLHGTREaevd--hllrAG--KLVDL-YR-VVRE-GLRis-ePS---YSIKYVER 444  Bordetella p...
Q1D5Q9         313 QVLGFRRvDDVDGSLIPDL-Y------F------RYLRGGD-----GSALTPVLEHNVNDLLLLAALL 362  Myxococcus xanthus DK 1622
EDK33594       152 EFGITREdKVISGSNLAKT-F------SkiikdsEYINRMP-----EVKKEKILLYNEQDIVSLFNIY 207  Clostridium kluyveri DSM...
Q97KD2         151 IFEINREsEIISGSTLAKT-FgkivkdS------EYSLRMP-----SDKKDKILLYNRQDVESLFNMI 206  Clostridium acetobutylicum
WP_012161636   404 YIGFSWHdKNASGLQSIYW-R------K------KWELTGD-----KAYKDALIQYNLEDCLALQLLK 453  Acaryochloris marina
Q01TS6         405 WLAFRWSdPDASGLQSIAW-R------I------RWERTHD-----GLSKAKLVEYNLEDCAALRTVT 454  Candidatus Solibacter us...
WP_011993706   333 FFGFNWR-TDINGLSVINY-Y------R------EYLATNN-----KSILKEILKYNEDDVRATEFIV 381  Fervidobacterium nodosum
jgi:Tlet_0528  352 FLGYQWR-TNLDGLRASRY-Y------Q------LWLSTRD-----QEYLDILLEYNEDDTRATKLVV 400  Pseudothermotoga letting...
WP_012707163   324 FYGFVRAt-PLREANVALTaL------Q------VALQVNDvvsvsDEIKAVVATYNDDDCRSTEALR 378  Sinorhizobium fredii
jgi:Mmc1_1283  440 FYMEKRDaEVATAGDSIVV-Y------E------EWRQSQD-----PQLLQNISDYNEDDCRSTLLLR 489  Magnetococcus marinus MC-1
Q7VYJ1         445 FYLPRRAgEVTNAGASIVY-Y------E------RWKATDE-----PRLLQDIADYNRDDVISTWRLR 494  Bordetella pertussis
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