Conserved Protein Domain Family
AmiC

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COG0860: AmiC (this model, PSSM-Id:223929 is obsolete and has been replaced by 440621)
N-acetylmuramoyl-L-alanine amidase [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 223929
Aligned: 85 rows
Threshold Bit Score: 100.92
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
16330376 101 DAGYTVDPqqvkvrgitptqwvvelptpelapasnnnapgpnpdgsslptqnlsaanppstgqqylqvtgnglfvrldkn 180 Synechocystis sp. P...
16078804     --------------------------------------------------------------------------------     Bacillus subtilis
15792593 397 DNNNLTLG------------------------------------------------------------------------ 404 Campylobacter jejuni
19704669  86 DKSKDSVSl----------------------------------------------------------------------- 94  Fusobacterium nucle...
15645391 121 IRHQMALKpp---------------------------------------------------------------------- 130 Helicobacter pylori...
17232314 100 APGYTTSPdklvikgdsashwilnfsaikkdvdhtgaseekisipvsnnlefagvvplsreisqldsqikrlmnryssls 179 Nostoc sp. PCC 7120
17227588 101 APGYTLDPqqikfvgltanrwtvqlptptseqaesspdntynvvtidsntrpslpnntrpelpnntrpefsdntisaapg 180 Nostoc sp. PCC 7120
17227589 101 NPGYTLDPqqvkfvgispsrwtvqlptptvervaspretaqqpvptipsetgvdtpsvlsprnvysvtpttkeapisnla 180 Nostoc sp. PCC 7120
15611776 121 IRHQMTPKpp---------------------------------------------------------------------- 130 Helicobacter pylori...
16799253     --------------------------------------------------------------------------------     Listeria innocua
16330376 181 gdnsgiriqpnarqstvnfelngavlpeslvgqslpvgqygveeikfsdnpnnprlslaladsgggwnayysrvgggvvl 260 Synechocystis sp. P...
16078804     --------------------------------------------------------------------------------     Bacillus subtilis
15792593     --------------------------------------------------------------------------------     Campylobacter jejuni
19704669     --------------------------------------------------------------------------------     Fusobacterium nucle...
15645391     --------------------------------------------------------------------------------     Helicobacter pylori...
17232314 180 agmffldmetgeyldingektfaaastikfpilialfeeidagrinpnetlvmrrdlmtggsgtmqyrkagsrfklmeta 259 Nostoc sp. PCC 7120
17227588 181 ttqieglqvtgdgffvrtsggnpqvqvi-rsrdratifmdiagatlspraprnipvnkhgvnrveltplqtrtpsvrmtl 259 Nostoc sp. PCC 7120
17227589 181 svtqidnlrvtgdgffirtrgatpq--------iqvnrtddnrvininitgaslspnierdlsinrygvssiqltqlstq 252 Nostoc sp. PCC 7120
15611776     --------------------------------------------------------------------------------     Helicobacter pylori...
16799253     --------------------------------------------------------------------------------     Listeria innocua
16330376 261 lpkqisrsgganpapgsaavpvsnntsnsspsssgnrspndrlvsqasnRNLANITAIEVTRDDSQLIIRGDRQInargn 340 Synechocystis sp. P...
16078804     --------------------------------------------------------------------------------     Bacillus subtilis
15792593 405 ---------------------------------------------------FYIQT---TNQNANKKATQSSSKTln--- 427 Campylobacter jejuni
19704669  95 ------------------------------------------------tLQVAPKVSYIMDATNNKIELNLQRTS----- 121 Fusobacterium nucle...
15645391 131 -----------------------------------------------khHALKHTTPKPAHKPIKKEAKKVKEKTptkha 163 Helicobacter pylori...
17232314 260 skmmiisdntatnmiidrlggknrlnqkfrtwglqntvirnllgdfkgtnktspkdlvrlaalisnnkllsatsnsrvmd 339 Nostoc sp. PCC 7120
17227588 260 rvdknspdwratnsnagglvvlpsrvvrlpnndngegntstlpdritttSAIATIQSVDLSSNGTQLLIRADQAVsgngg 339 Nostoc sp. PCC 7120
17227589 253 tvrismqvdsnspdwrvstssvggfvllpskgianlpqnntpntissntNSPATIQAVELGDNGTQLLIRSDQAVtakgg 332 Nostoc sp. PCC 7120
15611776 131 -----------------------------------------------khHALKHQTPKPTPKPIKKEAKKAKEKTtkhah 163 Helicobacter pylori...
16799253     --------------------------------------------------------------------------------     Listeria innocua
16330376 341 fnrltgnyeirldraqlspqfqspelatggplyqlnisqetndsvli-lvrpntgrrfgrlfrsggslyalelisdttas 419 Synechocystis sp. P...
16078804     --------------------------------------------------------------------------------     Bacillus subtilis
15792593     --------------------------------------------------------------------------------     Campylobacter jejuni
19704669     --------------------------------------------------------------------------------     Fusobacterium nucle...
15645391 164 hskhthsplnerstkkeipk-------------------------------------------------------keipk 188 Helicobacter pylori...
17232314 340 imsrcknrsllpvglgkgaviahktgtlgrvlgdagiiqtpsgkrylagiivarpfgdararafinqvsrlvygyldqpt 419 Nostoc sp. PCC 7120
17227588 340 wdrntglfritipnaqlapqvtgpslsanspilrirlqkqepntv------vvlvqpaagvqvgqlnkvgnqllalqlqg 413 Nostoc sp. PCC 7120
17227589 333 wdrtsglyriiinnaklsprvtgpafnanspilrvrlqpqvantvvvlvqpaagvqigelnqvsnqilalelqssrqlip 412 Nostoc sp. PCC 7120
15611776 164 skhahsplnersakkeipkkeipkkeipkkeipkk--------------------------eipkkeipkkeipkkeipk 217 Helicobacter pylori...
16799253     --------------------------------------------------------------------------------     Listeria innocua
16330376 420 rptgnlpannpprgnsgdqiSIAVQpppanatpsfppewsnppagnlpsvpRGGRLVVVDPGHGGKDPGAIG--IRGVQE 497 Synechocystis sp. P...
16078804   1 -----------------------------------------------------MVKIFIDPGHGGSDPGATG---NGLQE 24  Bacillus subtilis
15792593 428 ------------------tnYKSG------------------------------KLVVIDAGHGGKDSGALSdkKGSLKE 459 Campylobacter jejuni
19704669 122 ---------------------------------------------------KNKHLIVIDPGHGGKDPGAAR---GSVVE 147 Fusobacterium nucle...
15645391 189 keaenesknqvfiaekndtfIKTKR--------------------------KKHKKIVLDAGHGGKDCGAMS--ANLVCE 240 Helicobacter pylori...
17232314 420 sarnf--------------------------------------------------------------------------- 424 Nostoc sp. PCC 7120
17227588 414 srrlattpplppiqgqlpdpTNPRPlpqpg----------------trpvpKGRLSVFIDPGHGGKDPGAIG--IGGVRE 475 Nostoc sp. PCC 7120
17227589 413 pvglpplpstnrsqlpnpniDNPINipqpi----------------prsvpRGRLLVVIDPGHGGKDSGAPG--LGGLLE 474 Nostoc sp. PCC 7120
15611776 218 keaenesknqifiaekndtwIKTKR--------------------------KKHKKIVLDAGHGGKDCGAMS--ANLVCE 269 Helicobacter pylori...
16799253   1 -----------------------------------------------------MTKIWIDAGHGGKDSGATG---NGLVE 24  Listeria innocua
16330376 498 KDVVLAVSQYLQRYLEQQG--VRVLMTRTGDYFISLQGRTDMANRAGADLFVSIHANSMGMGRPDv--nGFEIYYHGN-- 571 Synechocystis sp. P...
16078804  25 KTLTLQIALALRTILTNEYegVSLLLSRTSDQYVSLNDRTNAANNWGADFFLSIHVNSGGGTG-------FESYIYPdvg 97  Bacillus subtilis
15792593 460 KDIVLSTALKLGNELKKRG--YKVLYTRSSDKFINLRDRTKYANDKRADLFISIHANAAPNATKAksseGVETFFLSPar 537 Campylobacter jejuni
19704669 148 KKIVLAVGTYLRDELSKDF---NVIMTRDSDFFVVLSERPKIGNKNKAALFVSVHANAAENKSAN----GVEVFYFSKks 220 Fusobacterium nucle...
15645391 241 KDIVLEVVKFLHKELKKRD--YSVLLTRDKDIYIDLVARTELANKKSADLFISVHANSIPKHSTSna-hGIETYFLSTar 317 Helicobacter pylori...
17232314     --------------------------------------------------------------------------------     Nostoc sp. PCC 7120
17227588 476 KDIILPISQRIAQVLQQNG--VQVVMARNSDFFVSLPGRVQMAERARADVFVSIHANAIGGNRADv--nGLETYYYDSg- 550 Nostoc sp. PCC 7120
17227589 475 KDVVLPIGLRIAAILEQNG--IQAVLTRDADFFVELQGRVDIAERANATLFVSIHANSVEG-RPDv--nGLEVYYYDSg- 548 Nostoc sp. PCC 7120
15611776 270 KDIVLEVVKFLHKELKKRG--YSVLLTRDKDIYIDLVARTELANKKGADLFISVHANSIPKRSTSna-hGIETYFLSTar 346 Helicobacter pylori...
16799253  25 KNWVLSVANQLQSELVKAG--FEVGMTRTNDTFYELSDRAKKANSFKADLFISIHFNAGGGKG-------FEDYIYTStp 95  Listeria innocua
16330376 572 ------------------------------------------AGLSQAIHR-NVVNSLN-VRDRRVRQARFYVLRNSRMP 607 Synechocystis sp. P...
16078804  98 ----------------------------------------apTTTYQSTIHsEVIQAVd-FADRGKKTANFHVLRESAMP 136 Bacillus subtilis
15792593 538 serskkaaekenqgdfeeinyfskqsilnflnrekivasnklAIDVQKNILtQTRKKYk-IVDGGVREAPFWVLVGAQMP 616 Campylobacter jejuni
19704669 221 spyaerianfensigekyg--dssdkiiqisgelaykknqenSIRLAKKVVeNIADRLe-MRNGGVHGANFAVLRGFNGT 297 Fusobacterium nucle...
15645391 318 serarkvaeqenkddvnlmdyfskslflnslntqrlivsnklAIDVQYGMLqSVRKNYPdVVDGGVREGPFWVLAGALMP 397 Helicobacter pylori...
17232314     --------------------------------------------------------------------------------     Nostoc sp. PCC 7120
17227588 551 ------------------------------------------LGLARAVHR-SILQNVN-VRDRGVRRARFYVLRKSSMP 586 Nostoc sp. PCC 7120
17227589 549 ------------------------------------------YALAESVRK-TILQSIGtLKDRGTRKARFYVLRKSSMP 585 Nostoc sp. PCC 7120
15611776 347 serarkvaeqenkddvnlmdyfskslflnslntqrlivsnklAIDVQYGMLqSVRKNYPdVVDGGVREGPFWVLAGALMP 426 Helicobacter pylori...
16799253  96 ag------------------------------------tvesQKIIHKNIIaKITKHG--MRDRGMKRANFAVLRETAMD 137 Listeria innocua
16330376 608 STLVEMGFVTGNEDNYKLTDPNFQQQMAQAIARGVLEYLQQR 649 Synechocystis sp. PCC 6803
16078804 137 ALLTENGFIDTVSDANKLKTSTFIQSLARGHANGLEQAFNLK 178 Bacillus subtilis
15792593 617 AILIEIGYITHPNEGKRIANKAFQDLLVKGIADGVESYFYNN 658 Campylobacter jejuni
19704669 298 GILIELGFVSNSYDAEILVDPSSQQKMAEEIAKSIREYLTR- 338 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
15645391 398 SILIEIGYNSHAIESKRIQSKPYQKILAKGIADGIDSFFSKN 439 Helicobacter pylori 26695
17232314     ------------------------------------------     Nostoc sp. PCC 7120
17227588 587 SILVETGYLTGRDDNGKLQSPAYQRQMADAIARGILQYLKR- 627 Nostoc sp. PCC 7120
17227589 586 SILVETGYMSGREDNPRLGSPEYQNRMADAIARGILQYLKRQ 627 Nostoc sp. PCC 7120
15611776 427 SILIEIGYNSHAIESKRIQSKPYQKILAKGIADGIDSFFSKN 468 Helicobacter pylori J99
16799253 138 AILLEAGFCDS-SDATILAKKAYQTDFCAGIISGVQELFGTP 178 Listeria innocua
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