Conserved Protein Domain Family
B12_rSAM_cofa1

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TIGR04385: B12_rSAM_cofa1 
putative variant cofactor biosynthesis B12-binding domain/radical SAM domain protein 1
Members of this protein family are one of two tandem B12-binding domain/radical SAM domain proteins that occur in a genome context with a pair of homologs to ThiC (phosphomethylpyrimidine synthase, EC 4.1.99.17), an enzyme that performs a complex rearrangement involved in thiamin biosynthesis, and a putative CobT (nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase), an enzyme of cobalamin biosynthesis.
Statistics
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PSSM-Id: 275178
Aligned: 3 rows
Threshold Bit Score: 844.134
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_07921613    9 KILLIQAISMEGMDIERVYPIGITTLGTIIRRSGrYAVRIFDMNMALSPYAELRRLIAEWQPDVLGISLRNLDPLGNRTT 88  Pseudoramibacte...
ZP_08811316    2 RVLMIQTPSVEEISQERVYPIGIVLLAGHLQGHG-HEIDILDMNLERDPFGVLKEKLLTFQPEAIGLSLRNIDPLGNKTS 80  Desulfosporosin...
WP_013382467   5 RILLIQAISMEGMDIERVYPIGIVTLASCIEKAGrYSLEIFDMNMAADPYGELREKMLSYQPDIIGISLRNVDPLGNRTT 84  Eubacterium lim...
ZP_07921613   89 SLIVPFALTLHFLRQFAPDLPLMAGGTAFTLFPERLMRDFPAITCGIVGEAEHNAVAVVDALAEgaaPPDIPGVIRRTEA 168 Pseudoramibacte...
ZP_08811316   81 SLIAPFIVTVRFIATVLPQAKLIVGGTGFSLFPERLMLELPELDYGIVGEAEVSFPALLSSIND---PPPMPGLCRREGS 157 Desulfosporosin...
WP_013382467  85 SLIVPFAITLSFIRRYLPDVTLMAGGTAFSLFPERLMREFPEIDLGVAGEAEEIIVPLLDSIDH---PPKLPGLVYRENG 161 Eubacterium lim...
ZP_07921613  169 GLHLNPPANDFDMGDYQMIDRDLNDPIPYLAVNKYVESIGVETKRGCCYRCGYCAYPKLSGRCVRLRDPKDVVDEIIMLK 248 Pseudoramibacte...
ZP_08811316  158 RVHVSPPATNFDMANYVPANRLLLDPALYQGINNYVPTIGIEAKRGCALNCAYCVYPQLQGKRLRCRPTTAVVDEMELLH 237 Desulfosporosin...
WP_013382467 162 EVKMVPPVGKFDMGSYTMPNRELLDPREYLRVNKYVESVGVETKRGCCYNCGYCSYPLLSGCGMRCREPASVVDEIEFLH 241 Eubacterium lim...
ZP_07921613  249 KRYGVTRIHFTDSIVNFPTSHLDAICEELLRRNAGIHWSGFFREDLFTPENARLYAASGCESFSLSPDGLCQQHLDLLDK 328 Pseudoramibacte...
ZP_08811316  238 KDYGIQSFHFTDPVLNVPHGHLEAICEELLRRKLKVRWDGFLREDQLNDKNVALYERAGCECFSFSPDGLCQESLDVLGK 317 Desulfosporosin...
WP_013382467 242 KEYGVSRIHLTDSIVNFPVNHLDDICKELIRRRLDIHWSGFFRENLLTPENAPLYRDSGCECFSLSPDGLSQTALDILDK 321 Eubacterium lim...
ZP_07921613  329 HIRVEQILTTAEILSRVGITTVYHYLVNLPGESPRTIRESKQMIDAIYDIHRGTKSLGTIVLNLVRIMPDTKIERLALAG 408 Pseudoramibacte...
ZP_08811316  318 NLSEAQILKAASLVAQTDVVSVYHFMVNVPGETEKTCEKSIQFVERLYEMHSKKKNLGTIILNNIRILPGTKIEKIARAQ 397 Desulfosporosin...
WP_013382467 322 HLTVDEILHTAKVLSDVGITTVYHFLVNTPGDTWKTVDEGKALIDQIYDIHAASKTIGTIVLNLIRIMPNTKVEKLALEN 401 Eubacterium lim...
ZP_07921613  409 GEITPDTDLLYPVYHDPAAYRTLRYELEIYHQQKNIAMWHG 449 Pseudoramibacter alactolyticus ATCC 23263
ZP_08811316  398 GVIDSETDLLYPTYYNPKPFSAFRYKLETIQQCRNVFMWQG 438 Desulfosporosinus sp. OT
WP_013382467 402 GVITPKTDLLFPTYYNPDPFKTVRYDLEIYHNKRNIFMWQD 442 Eubacterium limosum
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