3GG4,3L0Q


Conserved Protein Domain Family
FGGY_YpCarbK_like

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cd07782: FGGY_YpCarbK_like (this model, PSSM-Id:212663 is obsolete and has been replaced by 466800)
Click on image for an interactive view with Cn3D
Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases
This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.
Statistics
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PSSM-Id: 212663
Aligned: 34 rows
Threshold Bit Score: 626.149
Created: 19-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on similarity with other members of the FGGY family
  • Comment:FGGY proteins contain two domains, separated by a deep cleft that forms the active site. The N-terminal domain is primarily involved in substrate binding, while the C-terminal domain is mainly responsible for ATP binding.
  • Citation:PMID 8430315

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #### #                                                                ##
3GG4_A      5 SYFIGVDVGTGSARAGVFDlqGRXVGQASREITXFKPkADFVEQSSENIWQAVCNAVRDAVNQAdinpiQVKGLGFDATC 84  Yersinia pseudotub...
3L0Q_A      5 SYFIGVDVGTGSARAGVFDlqGRXVGQASREITXFKPkADFVEQSSENIWQAVCNAVRDAVNQAdinpiQVKGLGFDATC 84  Yersinia pseudotub...
YP_578601   3 DLVIAVDVGSSSARAGVFDkrGVLLARAEAPFATAHPePGHAEHSSDEIWTAVCQAVRGAITAGhiaaeAVKGIAFDATC 82  Nitrobacter hambur...
NP_105677   4 QFVCAVDVGTGSARAGILDasGTLLGRADRPIAMNQPkPDHAEHDSRDIWSAVCAAVRAAREKAgvaaqDIVGISFDATC 83  Mesorhizobium loti...
NP_541957   7 NYYLGVDVGTGSARAGLFDagGTMLASARRDIAIWREaGGIVEQSSDDIWQAVCESVREVVRVAgvdpaAVAGIGYDATC 86  Brucella melitensi...
ABE35273   18 RYVIGVDVGTGSARAGLFDlaGHMVASAKRDITLFHAsGSIVEQSSGEIWIAVCDAVKDALSQAavspdQVAGIGFDATC 97  Burkholderia xenov...
AAW61922    2 DLVLGIDVGTGSARAGLFTleGLKKASSVRPIQTWTPrPGYAQQSSQDIWAAVCEATRSALEMLde-pgQVIGIGFDATC 80  Gluconobacter oxyd...
ABQ33177    3 QAFIGVDVGTTSTRAGIFDpaGRLLAAARHPIRTWHEaGDVVEQSSDDIWRACCASVKAALAEAaiapeLIKGIGFDATC 82  Bradyrhizobium sp....
AAG01884    5 KTVIGVDVGSGSVRAGIFDlnGSLLSHATEKITTTRRsGSRVEQSSQEIWQAVCSCIRNALTLAdvcaqSVAGIGFDATC 84  Escherichia coli
NP_356202   4 QNLVAVDVGTASARAGIFDpaGRLLARSIHPILMQRPrENHAEHDSTDIWNAVCIAVKAALADAgvlpqSIAAIGFDATC 83  Agrobacterium tume...
Feature 1                               #                                                     
3GG4_A     85 SLVVLDkEGNPLTVSpsgrneQNVIVWXDHRAITQAERINATkHPVLEFVGGVISPEXQTPKLLWLKQHXPNtWSNVGHL 164 Yersinia pseudotub...
3L0Q_A     85 SLVVLDkEGNPLTVSpsgrneQNVIVWXDHRAITQAERINATkHPVLEFVGGVISPEXQTPKLLWLKQHXPNtWSNVGHL 164 Yersinia pseudotub...
YP_578601  83 SLVTLDrAGRPVTASltgedrWNVIMWADHRATAEADEITATrHRVLDHVGNVMSPEMEIPKLLWLKRHCPDaWHRYGLM 162 Nitrobacter hambur...
NP_105677  84 SLVVRDrQGDQLSVSttgdkrWDTIVWLDHRAISEADECTASsHEVLNYIGGVMSPEMATPKLMWLKRNLPQtWNEAGYL 163 Mesorhizobium loti...
NP_541957  87 SLVVLGeGGKPLAVGpsndraRNIIVWMDHRAGEQAERINTTkADVLGYVGGAISPEMETPKLLWLKEHKPEtFAAAWQF 166 Brucella melitensi...
ABE35273   98 SLVVLGaGGRPLPVGpseqaeRDIIVWMDHRAVAQAERINATgHEVLNYVGGKISPEMETPKLLWLLENRPAvFAAARQF 177 Burkholderia xenov...
AAW61922   81 SLVVVGgDYQGLSVDpdgapeQDIILWADHRALEETREINSSgQDVLRYVGGTISPEMETPKLLWLKRHLPRiYEQAVHF 160 Gluconobacter oxyd...
ABQ33177   83 SLVVLDrQGAPVTVSssgdptRNVIVWMDHRALSEARDINATkDEVLRYVGGSISPEMEMPKLLWLKRHLRTsFDGAGHF 162 Bradyrhizobium sp....
AAG01884   85 SLVVLDkNGDPLPVSpegdakQNIIVWMDHRATEQAERINAThHPVLNYVGGKISPEMETPKILWLKENMPEiYERAGQF 164 Escherichia coli
NP_356202  84 SLVIRDeRGEPVSVSttdddrFDTIVWLDHRAIGEADRLTASgHRVLDFAGNSVSPEMQMPKLMWLKTHMPQsWSRMSFA 163 Agrobacterium tume...
Feature 1                                                                                     
3GG4_A    165 FDLPDFLTWRATKDETRSLCSTVCKWTYLGHe-DRWDPSYFKLVGLADLldnnaAKIGATVKPXG-APLGHGLSqRAASE 242 Yersinia pseudotub...
3L0Q_A    165 FDLPDFLTWRATKDETRSLCSTVCKWTYLGHe-DRWDPSYFKLVGLADLldnnaAKIGATVKPXG-APLGHGLSqRAASE 242 Yersinia pseudotub...
YP_578601 163 LDLTDFLTWKATGRAAVSTCTVTCKWTYLAHekPGWQSDFLSRVGLDDLqd--rASLPASTLPIG-TSAGPLTA-ESAGQ 238 Nitrobacter hambur...
NP_105677 164 FDLADFLTWQASGSLARSQCTLTAKWTYLAHeeSAWQRDFFEIVGLDDLfe--hGNLPERASPVG-ADIGPLTA-QAAAE 239 Mesorhizobium loti...
NP_541957 167 FDLTDFLTWKSCGSLARSACTVTCKWTYLSHe-KRWDETYFRAVGLGELadesfVRIGTDVRAGG-ENLGGLSK-QAAAE 243 Brucella melitensi...
ABE35273  178 FDLTDFLTWRATGDLSRSTCTVTCKWTYLAHe-RRWDESYFRSVGLGVLadeafARIGQTVVDPG-TPLGSGLTaDAAAQ 255 Burkholderia xenov...
AAW61922  161 FDLPDFLTWRATGSLSRSACSTACKWTYLAHe-NRWDKGYFQSIGLEDLardgfSRIGNDIRPLGgLVDGGLNA-QAAAE 238 Gluconobacter oxyd...
ABQ33177  163 FDLADFLTWRATGAVARSMCTVTCKWNYLAHe-ARWSADYFHRIGLDEFvkedyARIGTEIVAPG-TALGHGLSrDAAAE 240 Bradyrhizobium sp....
AAG01884  165 FDLADFLTWRATGDLARSVCTVTCKWTWLAHe-NRWDPDYFRTIGLAELadedfIRIGHHIVSPG-TPCGNGLTaQAAAE 242 Escherichia coli
NP_356202 164 FDLADFLTWKATGSAQRSNCTQTAKWNFLAQehPGWQADYLAFAGLDDLke--rAGLPETTVMPG-GAIGPLSP-EAAAE 239 Agrobacterium tume...
Feature 1                   ##                            ###  #                              
3GG4_A    243 XGLiPGTAVSVSIIDAHAGTIGIlgasgvt-genanfdRRIALIGGTSTAHXAXSRSAHFIsGIWGPYYSAILPEYWLNE 321 Yersinia pseudotub...
3L0Q_A    243 XGLiPGTAVSVSIIDAHAGTIGIlgasgvt-genanfdRRIALIGGTSTAHXAXSRSAHFIsGIWGPYYSAILPEYWLNE 321 Yersinia pseudotub...
YP_578601 239 LGLpRDCVVGVGAIDAHAGGIGVlggld-----atglnETLAMIAGTSSCHMAASPDPRQIpGLWGPYYDAMLPGHWLNE 313 Nitrobacter hambur...
NP_105677 240 LGLtESCRVGAGVIDAYAGALGVlggfag---deqdigRHLALIAGTSSCVMAMSPDPQPFaGVWGPYYGAALPKLWLSE 316 Mesorhizobium loti...
NP_541957 244 LGLrPGTAIAAGLIDAHAGGIGTvgargs----egrilSRMAYVFGTSACTMTTTEQPVFVdGVWGPYFSAMVPGLWLNE 319 Brucella melitensi...
ABE35273  256 LGLrTGTPVATGVIDAHAGGIGTvgad-------gdpeACLAYVFGTSSCTMTTTRSPVFVpGVWGPYFSAMVPDAWLNE 328 Burkholderia xenov...
AAW61922  239 MGLpAGIPVGVSAIDAHAGGIGLfglntedslsddqleRSISLICGTSSCHMAVSKDARFVpGVWGPYWNAMVPEMWLNE 318 Gluconobacter oxyd...
ABQ33177  241 LGLvTGTPVGAALIDAHAGGIGAiggrasd-ggevdvcDRLAYIMGTSACIMATTRAPSFVpGVWGPYYQGMVPGFWLNE 319 Bradyrhizobium sp....
AAG01884  243 MGLlPGTPVAVGLIDAHAGGIGTvgve-------ggalNNLAYVFGTSSCTMASTTSPSFVpGVWGPYYSAMVPGLWLVE 315 Escherichia coli
NP_356202 240 LGLdTGCQVAAGMIDAYAGALGAlggcl-----aedvgKHVALIAGTSSCLVAMSTQPMPGrSLWGPYWQAVLPGHWLVE 314 Agrobacterium tume...
Feature 1           #   #                      #                                              
3GG4_A    322 GGQSATGALIDHIIQSHpcypalleqaknkGETIYEALNYILRQXagepeniafLTNDIHXLPYFHGNRSPRANPNLTGI 401 Yersinia pseudotub...
3L0Q_A    322 GGQSATGALIDHIIQSHpcypalleqaknkGETIYEALNYILRQXagepeniafLTNDIHXLPYFHGNRSPRANPNLTGI 401 Yersinia pseudotub...
YP_578601 314 GGQSATGSLLDHILDLHaegqs---lgadrHAVIAARIEAALAADgf------aFVDDLHVLPDFHGNRSPLADPDSVGV 384 Nitrobacter hambur...
NP_105677 317 GGQSATGALLDHIIRWHgag-------gepDAAMHAKIARRVAELraae--gdnLAARLHVLPDFHGNRSPLADPHAVGV 387 Mesorhizobium loti...
NP_541957 320 GGQSAAGAAIDHLIHMHpfaaeaekaaadqGKGLADSLAAEVEARggpe-ktamIVGDIHVVPEFLGNRAPFADPDARAV 398 Brucella melitensi...
ABE35273  329 GGQSVAGAAIERLLAMHpaaadakrraeheGQSLPAMLAALAVQAadslseaavLADGLHVVPEFLGNRAPLADPHARAV 408 Burkholderia xenov...
AAW61922  319 AGQSATGALIDFVISSHtfgsalrqeakdaGTSVYALLNARIEALerns-lpgtITADLHVLPDFHGNRSPHADPDLTGM 397 Gluconobacter oxyd...
ABQ33177  320 GGQSAAGAAVDHLLRSHpaaadataaargeGLDLISFLEKRILARtpqvgaaalLARDIHILPEFLGNRSPYADPASRAV 399 Bradyrhizobium sp....
AAG01884  316 GGQSAAGAAIDQLLDFHpaveearemaqrvNQPLPVWLADRILEKtaqpsdavaLAKGLHVVPEFLGNRAPFADPHARAV 395 Escherichia coli
NP_356202 315 GGQSATGALLDHIVRMHaag-------gepDTALHARIVARVTELrele--geaFADRLHVLPDFHGNRSPLADPHAVGV 385 Agrobacterium tume...
Feature 1                                                     ###  #                       #  
3GG4_A    402 ITGLKLSttPEDXALRYLATIQALALGTRHIIETXNQNGynIDTXXASGGGtKNPIFVQEHANATGCAXLLPeesEAXLL 481 Yersinia pseudotub...
3L0Q_A    402 ITGLKLSttPEDXALRYLATIQALALGTRHIIETXNQNGynIDTXXASGGGtKNPIFVQEHANATGCAXLLPeesEAXLL 481 Yersinia pseudotub...
YP_578601 385 IHGLRLDasAHSLTRLYFATAVGIALGTRHIIDALNDAGyaIAHIRLTGGHaASQLLVQLYADATDVAVSLPeqpDGVLL 464 Nitrobacter hambur...
NP_105677 388 VSGLTLDssFDSLCKLYWRTAVGIALGVRHVLEALNENGylIDTLHVTGGHtKNPLLMELYADATGCTVVEPladEAVLL 467 Mesorhizobium loti...
NP_541957 399 IAGLDLDtgMDSLAALYLAGLCGLGYGVRQIIEAQRAKGivTDTIVVSGGAaRSNLVRQVLADATGLVVTAStspEPVLL 478 Brucella melitensi...
ABE35273  409 IAGLGMEddLDSLVALYIAGICSVGYGLRQIIEAQANAGapIARVVISGGAgRLDLVRQLLADATGKPVLATqaeEPVLL 488 Burkholderia xenov...
AAW61922  398 ISGLRLSdtVDDLARLYLATLQGLAYGTKDIIEALNAQGyrIDTILATGGStKNPVFLREHANATGCRILLPaepDSVLL 477 Gluconobacter oxyd...
ABQ33177  400 IAGLDLDadIGAMERLFVAGLCGLAYGLADVMDAFAANGvtSRILVMAGGAsRSPLVRQIMADTTGLTVALPgtqEPVLL 479 Bradyrhizobium sp....
AAG01884  396 ICGLGMErdLDNLLALYIAGLCGIGYGLRQILDAQTAQGvvSKNIVISGGAgQHPLVRQILADTCGIPVITTqccEPVLL 475 Escherichia coli
NP_356202 386 VSGLTLDtsFDSLCRLYWRTAIAIALGARHVLDAMERFGyaVETLHVTGGHvKNPLLMELYADVTGKRIVVPataDAVLL 465 Agrobacterium tume...
Feature 1                                                                  
3GG4_A    482 GSAXXGTVAAgvfeSLPEAXAAXsr--iGKTVTPqtnkiKAYYDRKYRVFHQXYHDHXRYQ 540 Yersinia pseudotuberculosis
3L0Q_A    482 GSAXXGTVAAgvfeSLPEAXAAXsr--iGKTVTPqtnkiKAYYDRKYRVFHQXYHDHXRYQ 540 Yersinia pseudotuberculosis
YP_578601 465 GTACVAAAGCglypSVTAAAAAMtr--iGRTVQPaa-aaRDFFDRRYRAFLLMHEHRRAVS 522 Nitrobacter hamburgensis X14
NP_105677 468 GTGMVAATAAglfpDLNAACLAMqqggkRRAANPa---aGARFDRDYRIFLEMHRQRQALD 525 Mesorhizobium loti MAFF303099
NP_541957 479 GSAMLGAVASgaypDLVTAMQVMse--lGARNRPda-rrAKWHDHRFEAFMLLQATARKIR 536 Brucella melitensis 16M
ABE35273  489 GAAMLGSVAGgqfgDVRSAMARMsq--iSKTYQPdtgkiAGLHEARYRAFLKLQSVAREIR 547 Burkholderia xenovorans LB400
AAW61922  478 GAAILGAVASgtytDLRQAMAQMsh--aGDEIVPdp-rlAAYHAAKCSITHDMLSQQLTWR 535 Gluconobacter oxydans 621H
ABQ33177  480 GAAMLGAVASgtfrSIGETMASMss--lGRLSDPtdpdiAAFHRRKRRVHDLLRTLDRDSR 538 Bradyrhizobium sp. BTAi1
AAG01884  476 GSAILGAVAGniapSVGEAMQQFth--vDKYYYPqe-ryQSLHHRRYEAYKQLQHTAKLLR 533 Escherichia coli
NP_356202 466 GTAMTAATAGgvhaSLAAAGAAMy---pGNAEISgnpalAAHYERDYRRFLAMYRHRQELE 523 Agrobacterium tumefaciens str. C58

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