Conserved Protein Domain Family
sucB

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TIGR01347: sucB 
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Statistics
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PSSM-Id: 273565
Aligned: 9 rows
Threshold Bit Score: 576.685
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P07016         4 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLReG--- 80  Escherichia coli
CAA36678       3 IDIKAPTFPESIADGTVATWHKKPGEPVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT-E--- 78  Azotobacter vin...
P36957        71 VTVKTPAFAESVTEGDVR-WEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLR----- 144 human
P19262        74 TSIEVPPMAESLTEGSLKEYTKNVGDFIKEDELLATIETDKIDIEVNSPVSGTVTKLNFKPEDTVTVGEELAQVE----- 148 Saccharomyces c...
WP_010894048   3 IEVKVPVLPESVSDATIASWHKKAGEIVKRDENIVDLETDKVVLEVPSPVDGVLKEIKFDTGSTVTSNQVLAIIEeG--- 79  Xylella fastidiosa
WP_010896058   4 INILVPDLPESISDATVVKWHKKIGDTVHCDDNIVDIETDKVMLEVSSPCDGILQSILEKEGKVVISQQTLGEINkS--- 80  Buchnera aphidi...
WP_010898361   2 IEIKVPELAESITEGTIAQWLKKVGDHVSQGEYIAELETDKVNVEITAEHSGVIQELKREEGDTVEVGEVIAVLAeG--- 78  Bacillus halodu...
WP_001115439   2 PEVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGeGsgn 81  Staphylococcus ...
WP_010918229   2 ADINTPALGESVTEATVARWTKKVGEAVKKDEILVELETDKVSLEVASPADGVLSAIGAAEGATVVPGTVLGVVAeG--- 78  Caulobacter vib...
P07016        81 ------NSAGKETSAKs-eEKASTPAQRQQas-----lEEQNn-----------dALSPAIRRLLAEHNLDASAIKGtGV 137 Escherichia coli
CAA36678      79 ------GGAATAAPAA---APAPAAAAPAA--------AEAP-------------ILSPAARKIAEENAIAADSITGtGK 128 Azotobacter vin...
P36957       145 --------KTGAAPAKakpAEAP-AAAAPKae-----pTAAAvp----------pPAAPIPTQ--MPPVPSPSQPPSgKP 198 human
P19262       149 --------PGEAPAEGsgeSKPE-PTEQAEps-----qGVAAre----------nSSEETASK--KEAAPKKEAAPKkEV 202 Saccharomyces c...
WP_010894048  80 ------SIVAAPSPAPspvIDQKPVAVSAPaa-----kSSVD-------------SLPPGARFTATTEGIDPAQIEGsGR 135 Xylella fastidiosa
WP_010896058  81 ------TVVDNHLSNNhiiEKEDNLLKKEEky-----iTTEEkkeieyllkdnhkHLTPSMRRSVKIHNINNGFLNQvIE 149 Buchnera aphidi...
WP_010898361  79 -------DSPTASTEQaeaPKEEKKVSTVAsee---aaPAPGnr----------pVASPAARKLAREKGIDLEAVPTaDP 138 Bacillus halodu...
WP_001115439  82 askensNDNTPQQNEEtnnKKEETTNNSVDkaevnqanDDNQqr----------iNATPSARRYARENGVNLAEVSP-KT 150 Staphylococcus ...
WP_010918229  79 ------ATASAAPAAApapKAEAPKPAPAApa-----pAAAPaa----------aPVSPAPARIAAESGLDLSKVAGtGK 137 Caulobacter vib...
P07016       138 GGRLTR-EDVEKHLAK----APA--KESApAAAA-PAAQpalaA-----RSEK----RVPMTRLRKRVAERLLEAKNSTA 200 Escherichia coli
CAA36678     129 GGRVTK-EDAVAAAEAkksaPAG--QPAP-AATAaPLFAa--gD-----RVEK----RVPMTRLRAKVAERLVEAQSSMA 193 Azotobacter vin...
P36957       199 -------VSAVKPTVAp--pLAE--PGAG----Kg--------L-----RSEH----REKMNRMRQRIAQRLKEAQNTCA 246 human
P19262       203 TEP--KkADQPKKTVSk----AQ--EPPVaSNSFtP--F----P-----RTET----RVKMNRMRLRIAERLKESQNTAA 259 Saccharomyces c...
WP_010894048 136 RGAVTK-EDIINFAKQ----NGA--ARASg-------------T-----RLEE----RVPMTRIRQRIAERLMQSKNSTA 186 Xylella fastidiosa
WP_010896058 150 TSKKTNfENIIKEEKKe---SNQ--ILFNhNIFNaNENN----K-----NNNNkvtnRVKMTRLRQRIAERLLDSKNNTA 215 Buchnera aphidi...
WP_010898361 139 LGRLRK-QDVASYEEKp--aASA--PAKApEKKAaPAAA----NvespgKPVE----RIKMSRRRQTIAKRLVEAQQTAA 205 Bacillus halodu...
WP_001115439 151 NDVVRK-EDIDKKQQAp--aSTQttQQAPaKEEKkYNQYp---T-----KPVI----REKMSRRKKTAAKKLLEVSNNTA 215 Staphylococcus ...
WP_010918229 138 DGRVTK-GDALAALEAr--aSAP--APAAaAAAPrALHE-----------REE----RVKMTRLRQTIARRLKEAQNSAA 197 Caulobacter vib...
P07016       201 MLTTFNEVNMKPIMDLRKQYGEAFEKRH-GIRLGFMSFYVKAVVEALKRYPEVNASIDG--DDVVYHNYFDVSMAVSTPR 277 Escherichia coli
CAA36678     194 MLTTFNEVNMKPVMELRAKYKDLFEKTHnGVRLGFMSFFVKAAVEALKRQPGVNASIDG--NDIVYHGYQDIGVAVSSDR 271 Azotobacter vin...
P36957       247 MLTTFNEIDMSNIQEMRARHKEAFLKKH-NLKLGFMSAFVKASAFALQEQPVVNAVIDDttKEVVYRDYIDISVAVATPR 325 human
P19262       260 SLTTFNEVDMSALMEMRKLYKDEIIKKT-GTKFGFMGLFSKACTLAAKDIPAVNGAIEG--DQIVYRDYTDISVAVATPK 336 Saccharomyces c...
WP_010894048 187 MLTTFNEINLAKVSNIRKELQEEFQKAH-GIKLGFMSFFVKAAANALQRFPLVNASIDG--TDIIYHGYSDISIAVSTDK 263 Xylella fastidiosa
WP_010896058 216 MLTTFHEVNMKPIILLRKKYGEDFEKKH-NVRIGFMSFFVKAVIQALKNFPEINAYIDQ--TDIVFYKNFDISIAISTPR 292 Buchnera aphidi...
WP_010898361 206 MLTTFNEVDMSAVMELRKRRKDQFFEKH-DVKLGFMSFFTKAVIGALKEFPLLNAEIQG--DEILLKKYYDIGIAVSTDE 282 Bacillus halodu...
WP_001115439 216 MLTTFNEVDMTNVMELRKRKKEQFMKDHdGTKLGFMSFFTKASVAALKKYPEVNAEIDG--DDMITKQYYDIGVAVSTDD 293 Staphylococcus ...
WP_010918229 198 MLTTFNEVDMSAVMALRAQYKDVFEKQH-GVKLGFMSFFVKAVVAALKAIPDVNAEIDG--QDVIYKNHYDIGVAVGTDK 274 Caulobacter vib...
P07016       278 GLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMA 357 Escherichia coli
CAA36678     272 GLVVPVLRNAEFMSLAEIEGGINEFGKKAKAGKLTIEEMTGGTFTISNGGVFGSLLSTPIVNPPQTAILGMHKIQERPMA 351 Azotobacter vin...
P36957       326 GLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVA 405 human
P19262       337 GLVTPVVRNAESLSVLDIENEIVRLSHKARDGKLTLEDMTGGTFTISNGGVFGSLYGTPIINSPQTAVLGLHGVKERPVT 416 Saccharomyces c...
WP_010894048 264 GLVTPVLRNVERMSFADIEHHIADYAKKARDGKLSLEELQGGTFTVTNGGTFGSLLSTPIVNPPQSAILGMHTIKERPIA 343 Xylella fastidiosa
WP_010896058 293 GLITPVIRNADTMTMAEIEKKIKDFSIKGLQNKINIKELMGGNFTITNGGVFGSLMSTPIINPPQTAILGMHVIQERPVV 372 Buchnera aphidi...
WP_010898361 283 GLVVPVVRDADRLGFAGIEREIMHLGKKARENKLSLSELQGGTFTITNGGVFGSLWSTPILNAPQVGILGMHKIQWRPVA 362 Bacillus halodu...
WP_001115439 294 GLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIA 373 Staphylococcus ...
WP_010918229 275 GLVVPVVRDADALNLAGIEKTIGDLGKRARNGQLAIEDMQGGTFTITNGGIYGSLMSTPILNAPQSGILGMHAIKERPMV 354 Caulobacter vib...
P07016       358 VN-GQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 405 Escherichia coli
CAA36678     352 VN-GQVVILPMMYLALSYDHRLIDGKEAVTFLVTMKDLLEDPARLLLDV 399 Azotobacter vinelandii
P36957       406 IG-GKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 453 human
P19262       417 VN-GQIVSRPMMYLALTYDHRLLDGREAVTFLKTVKELIEDPRKMLLW- 463 Saccharomyces cerevisiae S288c
WP_010894048 344 EN-GHIVIAPMMYVALSYDHRIIDGKDSVQFLVDIKNQLEAPGRMLFGL 391 Xylella fastidiosa
WP_010896058 373 VN-GQIKILPMMYLALSYDHRLIDGKESVGFLINIKNILEDFNRIAIDV 420 Buchnera aphidicola
WP_010898361 363 IDeENFENRPMMYIALSYDHRIVDGKEAVSFLVRVKEMLEDPESLLLDS 411 Bacillus halodurans
WP_001115439 374 IDqDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLES 422 Staphylococcus aureus
WP_010918229 355 IN-GKIEIRPMMYLALSYDHRIVDGAGAVTFLVKVKEAIEDPQRLLLEL 402 Caulobacter vibrioides
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