Conserved Protein Domain Family
fdx_plant

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TIGR02008: fdx_plant 
ferredoxin [2Fe-2S]
This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Statistics
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PSSM-Id: 273926
Aligned: 10 rows
Threshold Bit Score: 141.438
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P00249  3 TYKVRLFNAAEglDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVA 82  Desmonostoc muscorum
P00225  1 AFKVKLLTPDG--PKEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAA 78  white popinac
P00231  3 SYKVTFVTPSG--TNTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVA 80  American pokeweed
P14936  3 VYKVKLIGPDGq-ENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVA 81  radish
P07484  3 KYTVTLSTPGG--VEEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVA 80  Dulse
P07838  2 SYKVTLKLDDGs-EAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVA 80  Bryopsis maxima
P22341  2 TYSVKLINPDG--EVTIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTT 79  Euglena viridis
P15788  3 SYKVTLINEEMglNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVA 82  Halothece sp. PCC 7418
P13106  2 TYSVTLVNEEKniNAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVA 81  Bumilleriopsis filiformis
P00252  4 VYKVTLVDQEGt-ETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVA 82  Desmonostoc muscorum
P00249 83 YPTSNCEIETHREDAIA 99  Desmonostoc muscorum
P00225 79 YPRSDVVIETHKEEELT 95  white popinac
P00231 81 YPTSDVTIETHKEEDLT 97  American pokeweed
P14936 82 YPQSDLVIHTHKEEELF 98  radish
P07484 81 YPTSDCQIKTHQEEKLY 97  Dulse
P07838 81 YPTSDCTILTHQEEEMI 97  Bryopsis maxima
P22341 80 YPTSNCTIETHKEDDLF 96  Euglena viridis
P15788 83 YPASDCTIITHQEEELY 99  Halothece sp. PCC 7418
P13106 82 YPTSDCKVQTHAEDDLY 98  Bumilleriopsis filiformis
P00252 83 YPTSDLKIETHKEEDLY 99  Desmonostoc muscorum
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