Conserved Protein Domain Family
HTH_17

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pfam12728: HTH_17 (this model, PSSM-Id:403817 is obsolete and has been replaced by 463684)
Helix-turn-helix domain
This domain is a DNA-binding helix-turn-helix domain.
Statistics
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PSSM-Id: 403817
Aligned: 208 rows
Threshold Bit Score: 33.9727
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q24ZC0         183 YVDTSKAAELLKISKSTLSQQINSGIIkGAikvPftpkqtK---WMIPMESIVDYKQRRI 239 Desulfitobacterium hafniense Y51
WP_011515447    12 YYSTRTAAKLLNVSLGTVQKMVERGELgAW---Kt-----NgghRRIHKETVHRLLASRS 63  Cupriavidus
jgi:Pnap_0451   22 YCGTSYAAKVLGLSVATVQSLVEKGEIeAW---Kt-----LgghRRISLHSLNAYLTKYS 73  Polaromonas naphthalenivorans CJ2
CBK67898        60 firsADVCKLLNISNSTLRNLRAERAIpFY---K------LggtFLYSKEEIMNYLASNy 110 Bacteroides xylanisolvens XB1A
EAP86690        37 YLKSAEVLEMLQISPGTLQNLRINGTLpYS---K------IggvILYDAEEINQVLLENR 87  Croceibacter atlanticus HTCC2559
jgi:Sph21_0305  38 WLKSAEVRRLLGISPGTLQNLRAGGTLpYR---K------LggsMYYRREDIRKMMEGGn 88  Sphingobacterium sp. 21
WP_003010415    41 YLSGEQVCEMLHISKRTLQQYRDDGLIpFI---K------LerkILFRESDIIKVLEDNy 91  Bacteroidetes
Q8A8N7          47 FYTDRELAEKLKVSRRSLQQYRDSGLL-AFt--R------LggkILYRSSDIEKLLDGCy 97  Bacteroides thetaiotaomicron
Q5LDK0          41 FLSNRDAAKCLKVSIRTLQEWRDTGVIpYI---Qi-----Kg-kIIYRQSDIERLLQTyy 91  Bacteroides fragilis NCTC 9343
wustl:BV3621    45 YLTDKEVAELLRVSRRTLQEYRNNRIL-PFillAg-----K---VLYPESGLREVLEANY 95  Bacteroides vulgatus ATCC 8482
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