3GDE


Conserved Protein Domain Family
CDC9

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COG1793: CDC9 
ATP-dependent DNA ligase [Replication, recombination and repair]
Statistics
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PSSM-Id: 441398
Aligned: 756 rows
Threshold Bit Score: 279.498
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3GDE_A       101 LIkkkkmttlafeeltvrkvretfdeiasltgegsmkrkimlltglyglatplearyltrlilnemrlgvgegimrdaia 180
WP_011686782     --------------------------------------------------------------------------------    
WP_011524229  31 kLpiq--------------------------------------------------------------------------- 35 
WP_012523256   6 dLpvp--------------------------------------------------------------------------- 10 
WP_010915332   8 eFplp--------------------------------------------------------------------------- 12 
WP_012592670  11 VFgip--------------------------------------------------------------------------- 15 
WP_011582018  16 aAale--------------------------------------------------------------------------- 20 
WP_014493270     --------------------------------------------------------------------------------    
WP_012376941   2 aFplr--------------------------------------------------------------------------- 6  
NP_436551     24 GFplp--------------------------------------------------------------------------- 28 
3GDE_A       181 rafradpetveraymitndlgrvavvakkegeeglrkmkieihipVRMMLAQVAESLESAVRemrtAAVEWKFDGSRVQV 260
WP_011686782   1 -------------------------------------------mtMAPMEALAALAVPEGPE----WQYEPKWDGFRCIA 33 
WP_011524229  36 -------------------------------------------ppFPPMEAKLVDAIPEGAL----WQYEPKWDGFRCVA 68 
WP_012523256  11 -------------------------------------------ldLPPMEAKLVDEVPRESG----WRFEPKWDGFRCLA 43 
WP_010915332  13 -------------------------------------------lnTQPMEARTAEALPREDGl---WQYEPKWDGFRCLG 46 
WP_012592670  16 -------------------------------------------veTAPMEARLADLLPEDSA----WQYEPKWDGFRCLA 48 
WP_011582018  21 -------------------------------------------mpIPPMEAKTVETLPEEPG----WDFEPKWDGFRCLA 53 
WP_014493270   1 ---------------------------------------------MQLMEAESVAQLPRGAQ----WQYEPKWDGFRCLL 31 
WP_012376941   7 -------------------------------------------tdLPPMEAASVDAIPLGDA----WQYEPKWDGFRCLA 39 
NP_436551     29 -------------------------------------------vsTAPMEARSATELPGGDA----WQYEPKWDGFRCLA 61 
3GDE_A       261 HWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKPGVILDGEVIAVKEgKPMPFQHVLRRFRRK--HdVAKMVEKIPLEAH 338
WP_011686782  34 FRRGDEVKLQSKSGQPLGRYFPDIVGALQRVRAKEFVLDGELVIPVE-GDLSFNELQLRLHPAatR-VNMLAAKHPALYI 111
WP_011524229  69 FRDGDTVELQSKAGQPLGRYFPEIVEALLKLKPTEFVLDGEIVILRN-GHLSFDDLLMRIHPAasR-IKKLSVETPATYL 146
WP_012523256  44 FRAGDEVALRAKSGKPLDRFFPDVVAALRALPVERFVVDGELTIEVE-GRLSFEALQLRLHPAesR-VRKLAAAQPAALT 121
WP_010915332  47 FKSGKAVDLRAKSGKPLGRYFPELMAALSALAATEFVIDGEIIVEIE-DRASFDALQMRLHPAesR-IRKLSRETPAQLV 124
WP_012592670  49 FRAGEDLELRAKSGKPLQRYFPEVAAYLRQIPAGRFVVDGELIIEID-GEFSFAALQARLHPAasR-IRRLSGETPARFI 126
WP_011582018  54 HRDGDKIELYAKSGKPLGRYFPEVVEIVRALPGRKFILDGELVIAQG-EALSFDALQLRLHPAesR-IRKLARETPAMLI 131
WP_014493270  32 IRERSRVSMQSKSGRDLVRYFPEIAAAAAALSPKTLTLDGELIIELD-EGYSFDALLQRIHPAasR-VKHLAKETPATFM 109
WP_012376941  40 FRDDGEVELRSKAGQPLARYFPEIVQALAALRPKRFVLDGELVVPSG-EGLDFDALLQRIHPAasR-VKKLAAETPARLV 117
NP_436551     62 FKSGDEVDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELVIEVD-GRLSFDALQMRLHPAasR-VQKLSQETPAKLI 139
3GDE_A       339 FFDILYHDG-E-CIDLPLRERRKLLESAVNESek------iKLAKQIVtdSVDEVRKMYDEAIS-AGHEGVMIKLPSSPY 409
WP_011686782 112 VFDLLTGd----LPRRPLSERRAKLEEFAARNfegi--kglGLSPATG--SLPDARKWLRTMGG--GLDGIIAKRLDAEY 181
WP_011524229 147 VFDLLVDDKaHsLVEETQAARRERLELFFKTfkgn---asvRLSPMTR--DHAEAEKWMKKLAV-IGFDGVVAKALDQPY 220
WP_012523256 122 LFDCLMDAKgRsLVEAPLSKRREALEAFVARlgga---pavRLSPFTE--DRARACRWLDEAGF--VLDGVVAKRADGPY 194
WP_010915332 125 VFDMLVAPGgRlLVELPLHDRRAEAEDLVAKakt----ktlRLSPATT--SLATADKWLKGAGTgGATDGVVAKLLNDPY 198
WP_012592670 127 LFDMLVDAEgAvLIGEPLLTRRRALEAFMARAgaps--rqlELSPVTL--DPKKAHRWLEDSRR-GAIDGVMAKRRDGFY 201
WP_011582018 132 LFDMLMKPDgEsLMTAPLTARRSALESFLAQAvvs----giRLSPHTR--DRREAEAWLEGAGG--ALDGVIAKKFDGAY 203
WP_014493270 110 VFDLLRSGA-RdLSGLPLMKRRAALETLAGKAfqas--glfRLTPASR--NYADAEAWLNSVNE--DHDGVVAKRLDLPY 182
WP_012376941 118 VFDLLADERgAsLVERPLRERRAALERFAQKNfptgadarvRLSPATT--ELKLARKWFGAVGA--SLDGLIAKRRDASY 193
NP_436551    140 LFDMLAGTDgTiLTGEPLQTRRACLEAFAKKNava---emlESSPFTL--DIKEAERWLTSWEA-GATDGVVAKRRDGVY 213
3GDE_A       410 IPGKR-GKNWLKVKaIMETLDLVVVGGEWGEGKRS--HWLSSFELACLDPvTGKLLKVGRVATgFTEEDLEELTEMFRPL 486
WP_011686782 182 EPGER-SGAVQKIK-SLRSADCVVGGFRYATSG----KVVGSLLLGLYDD-EGLLHHVGYTSS-IAGAEKAALTKKLEAL 253
WP_011524229 221 QSGER-A--MRKIK-RIRTADCVVGGFRYASKG----GEVGSLLLGVYND-EGQLDHIGFSSS-FAREERKQLKKILKPY 290
WP_012523256 195 VPGER-A--MLKIK-KIRTADCVVGGFRHAKGT----EAVGSLLLGLYGD-DGLLHHVGFTST-ISNAERPELTRRLEAL 264
WP_010915332 199 KPGER-A--MVKVK-PLRTADCVVGGFRYQKGK----RQVGSLLLGLYNG-DGLLDHVGFTST-IANDERAVLTQRLGHL 268
WP_012592670 202 EPGAR-A--MIKVK-RKRTADCVVGGFRYAANS----RKVGSLLLGLYDD-AGKLDHVGFTSA-ISEAERQALTEKLEAL 271
WP_011582018 204 ESGER-A--MLKVK-RIRSADCVVGGFRYGKDS----TLVGSLLLGLFNG-EGKLDHVGFTSM-ISNEERPALTRRLEKL 273
WP_014493270 183 RGGTRdG--MQKIK-LLRSADCVVGGFRYAERKQGnrKVVGSLLLGLYDK-GGLLHHVGFTSG-IRSSDRLALTDRLEKI 257
WP_012376941 194 AAGERtA--MVKIK-PLRTADCVVGGFRYAEKK----KEVGSLLLGLYDA-DGKLHHVGFCSG-LKAAEKPALTRKLEAL 264
NP_436551    214 ECGER-A--MVKVK-RLKTADCVVGGFRYESDS----SLVGSLLLGLYDT-EGLLNHVGFTAT-ISDKERPALTNQLEAL 283
3GDE_A       487 IVsqq-------gkKVE----------FIPKYVFEVAYQEIQKspkyeSgyALRFPR-FVRLRDDKDVDEAdTIERVE-- 546
WP_011686782 254 REqpgftgrapgapSRWstersgefepLAPKLVVEVQYDHFTG-----G--RFRHGTkFLRWRHDKAPSQC-LMSQVEhe 325
WP_011524229 291 MNgegftgkapggpSRWstertgewerLDPKLVCEVSYDHFSG-----G--RFRHGTkFLRWRPEKEPKSC-TYEQITpa 362
WP_012523256 265 AGgsgftgnapggpSRWstertgewtpLRPELVVEVRYDQVTG-----E--RFRHGTkLVRWRPDKAPRQC-TFEQIRpp 336
WP_010915332 269 LGgsgftgkapggpSRWssersgewepVRPELVVEVRFDQVTG-----N--RFRHGTkLLRWRPDKEPRQC-TFGQIE-- 338
WP_012592670 272 RGppgftgrapggpSRWstersskwepLRPELVVEVCFDQVTD-----G--RFRHGTrLMRWRPDKSPRQC-KMAQLN-- 341
WP_011582018 274 KGppgftgkapggpSRWsterssewepLRHELVVEVAYDQVTG-----D--RFRHGTrLLRWRPDKAPHQC-TFEQLEhe 345
WP_014493270 258 VGlqsftgnspggpSRWstkrsaewkaVRPTFVVEVSYDHVTG-----D--RFRHGTkVIRWRPDKKPSQC-RMDQLRqr 329
WP_012376941 265 VGgpgftgrapggpSRWstkrssewqpLEPKLVVEVSFDHVTA-----G--RFRHGTsLLRWRPDKAPRQC-TLEQLHqk 336
NP_436551    284 REppgftgkapggpSRWssersgewepVRPELVVEVRFDHVSN-----R--RFRHGTkLMRWRPDKDPRQC-TYQQIMps 355
3GDE_A       547 -------N-LYK 550
WP_011686782 326 tr---splgLLA 334
WP_011524229 363 kq-rgsmD-QFL 372
WP_012523256 337 ar-aggvP-SAT 346
WP_010915332     ------------    
WP_012592670     ------------    
WP_011582018 346 arpgkliEeVIR 357
WP_014493270 330 aa-tqtfR-AAT 339
WP_012376941 337 ts-ralaW-LR- 345
NP_436551        ------------    
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