Conserved Protein Domain Family
IMP4

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COG2136: IMP4 (this model, PSSM-Id:225047 is obsolete and has been replaced by 441739)
rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 225047
Aligned: 16 rows
Threshold Bit Score: 134.447
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3183322   93 VPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRtGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHL--PN-- 168 fission yeast
14601409  13 GYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR-GHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVegPErp 91  Aeropyrum pernix
19074991  68 LPKVMVTTSRSPSSQLLHFAKHLSLVLNGENFIRG--QLREEEVSDVAHKYGYTCVIIVHENRGRPASLAVSYFp----f 141 Encephalitozoon cun...
20090593   1 ---MLITTSRKPSAKTRTLCKLLSRFITGRCITRG-----KMGMQELIGFAEGGPLIVVGEYHGNPGELGFYDDagKLlf 72  Methanosarcina acet...
2496063    1 ---MILTTSRKPSQRTRSFARDLERTLNIPYVQRG-------KLSLKEIFEIDKHVLLIGEFKANPGTLVVYDVe----- 65  Methanocaldococcus ...
20093815   1 MRPAAITTSQRPARRTRSLCRDLECALPDATYVLR-GTKNLRDTVLEALESGAEVLFYVTEAKGNPARLHVIDLg-EIpp 78  Methanopyrus kandle...
15678707   1 ---MLLTTSRKPSQRTRSFSQRLSRIMGWRYINRG------KMSLRDVLIEARGPVAVVSERHGNPARITFLDEr----- 66  Methanothermobacter...
14520492   1 --MMLITTSHRPTRRTRSFGHDLERVFPNSLYMTR-GKKTIQELLMEAYDRGYERLLIINVWKGNPLKMTFIKVh-PDdw 76  Pyrococcus abyssi
18313175   4 GCKVIITTSREPSKKTLELVNDLVNSLPGTSKIVR-GKKSFITLLEEAVACGARYIAFIWERRGMPFALLFYDVinRe-- 80  Pyrobaculum aerophilum
14591643   1 --MMLITTSHRPTRRTRSFGHDLERVIPNSLYLTR-GKKTIQELLMEAYDRGYERLLIINVWKGNPLKMTFIKVh-PEdw 76  Pyrococcus horikoshii
3183322  169 GPSFYFTLSNLQTAKEISNHGR------STGHIPELIINNFSTRLG-MTVARAFQSL----FIQTPQIQGRQVVTIHCQR 237 fission yeast
14601409  92 DNIVSFIVKGVSLSRERRWGLP------S-LRGGEVLVARPLDSGVaVEFADAFVIA----FHARLK---PPEAAGYVEA 157 Aeropyrum pernix
19074991 142 GPTMRFTIIDHFLTRRAFPLAPkayfvcDNMEGTVGIKIKEKMALLfPQCSRAKRIVslvnRNDTIAFRHYLIENGDRTT 221 Encephalitozoon cun...
20090593  73 SLRFSDWYSEDIGSYWFPDLEP-------VLAGQGEIADAFESFFHfKRVESEEVDQlpplSTVLVAGEKEIDFTGSGKS 145 Methanosarcina acet...
2496063   66 NEKRLSSFISVKLQREICGEKIy-----NDDGIRIKISRELKDNEEfQKYYEIYDEFlfqhLNINEDSDITLRLEKDPKY 140 Methanocaldococcus ...
20093815  79 RLRLSFWLGGVKLQRELFGNRV------D-LSGDLVITTSKRPVSGhMKVAESLSEVlgveFVPRAG-SLEDVLEEALAD 150 Methanopyrus kandle...
15678707  67 GGERGYILFNPSFEMKKPELADk----aVRVSSCPPGSEGLCNLMGlEVDESSSRDAwsirTDEEYAWVMELMDARGTPA 142 Methanothermobacter...
14520492  77 GYLGYLYLHGVKLQREMGFRGLn----pIREDMPLVVTTAKRVGLDhLAFAQVFSELttgkFVPRGDKSLLSIADKYNTD 152 Pyrococcus abyssi
18313175  81 WKPYMLKISGIKTRREFPVFIS------RRPPAKSAVIVDLSEGEVgDIFTEIFGYPilysLDAVRGLFDTVVLIRRTDG 154 Pyrobaculum aerophilum
14591643  77 GYLGYLYLHGVKLQREMGFKGLn----pIREDMPLVITTAKRVGLDhLAFAQVFSELttgkFVPRGDKSLLSIADRYNTD 152 Pyrococcus horikoshii
3183322  238 DFLFFRRHRYAFREksnmpdgIGTGLQELGPRFTMRLRMVQKG-VWDR 284 fission yeast
14601409 158 VIESLDARTVAVT--------FRYGGAPVGPMLRLGKPAEMVK-RGRR 196 Aeropyrum pernix
19074991 222 LSKSLGMDLRAYEIrkgtfemDGEFEWAYKPYMNSRRTREEIGcTSQK 269 Encephalitozoon cuniculi
20090593 146 LFKLNVKGFKKY------------------------------------ 157 Methanosarcina acetivorans C2A
2496063  141 LFAIQFYKGRVKIGp-----lIRIKSIKLFDSLL-------------- 169 Methanocaldococcus jannaschii
20093815 151 VLLVVEGHPRHLGTl-----tFYRRTEKVGPSLFYRDFRTKDE-RMKL 192 Methanopyrus kandleri AV19
15678707 143 GFKLLIRDFRVGE----------------------------------- 155 Methanothermobacter thermautotrophicus str. Delta H
14520492 153 VLAVIERHPRGIVVnfy--rlDVTKERAVGPLINVKIWIMEDGrRWDY 198 Pyrococcus abyssi
18313175 155 YLVELLGSDLGPRa-------SSIRIKKVVYRHV-------------- 181 Pyrobaculum aerophilum
14591643 153 VLAVIERHPRGIVInfy--rlDITKDRPVGPLINVKIWIMEDGrRWDY 198 Pyrococcus horikoshii
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