Conserved Protein Domain Family
YjgR

?
COG0433: YjgR (this model, PSSM-Id:223510 is obsolete and has been replaced by 440202)
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair]
Statistics
?
PSSM-Id: 223510
Aligned: 71 rows
Threshold Bit Score: 73.1057
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
16120093  279 SWQSDAEVRKEGLVDGRDTFFeeVVGSLFEVEEQRS-DQDDRQLSEAVEKRIEYIDAKNAKrsftvNIRAVGVPIDdt-- 355  Halobacterium sp....
15678569    1 ----------MGSVISAEIFR--RYQQYKATGELRRkPVIGIVIEEAPRVLGKEVIERQGN-----NIYSTIAREG---- 59   Methanothermobact...
15897104    1 ----MGIENFTAKIVGLSIVS--LLVVLMFLYKLIYiIPLIFIVLLVFQSEKKIFAFLSKN------TKQIQPYSIed-- 66   Sulfolobus solfat...
15897226    4 NKNLWIPILLIILGIGFLFHNliNINLMFFVFPIIMiVVISFIFRNSLKVKINKFILKNGIfqimyDNTCICGVAMk--- 80   Sulfolobus solfat...
15897329    2 YEKRHIVANILMLIVAYLVDN---LMYYLTSAGNLSqLVNNLSTLLLIIPILVVIFSVFITl----MFSSIIVSFLyy-- 72   Sulfolobus solfat...
13541210   86 KKVIYLGLDRV-EKNGASYQM--KMNVLDRRFDANMlGGWIRSIFSSKAVSNNTWGPRLEV-----MFRSVLAEYI---- 153  Thermoplasma volc...
13541470   29 VPRVYGIPSEFLLVLAFSSFIflVLFYLIGLYSLLSfLIPVVVEINRKPSNRVKQYLTKYTekilqRLRKSSKTSVsr-- 106  Thermoplasma volc...
16081693    4 SASSFLILARFFGIYAILAIPisVAIVHPRIRHVLIaRLNSIFRIQLQTPDIMKYGEYTLIkm--hNIPAIVAKTVsayd 81   Thermoplasma acid...
16082224   67 RDVVYLGLDTA-MEDGTERKI--RMNVLDQDADPDMiAGWIRSIFSSSSFSNNTWGPRLDV-----MFRSVLAEYI---- 134  Thermoplasma acid...
13471807   74 LDLEELLATRL-LVQGNSGSG--KSHLLRRLLEQS--APWVQQTIVDPEGDFVSLGERYG-------HLVIDAEEH---- 137  Mesorhizobium loti
16120093  356 rDDLDGRMDSLLPVFDp-LDgPFYEVEGQRl--RDSGFREKTKEKKAraalqrllnrELTTGRGKTRPELVlcgtelanf 432  Halobacterium sp....
15678569   60 --------RKFNIGLIa-IT-QLVSLIPR----TVLANMNTKIILGN----------EMAQERAEI-------------- 101  Methanothermobact...
15897104   67 gVFYNEKNASAVLIIDd-IQmDYKDFTNSNl-rSFISSFHKILDIAKd--------iNIVLKRESLDKNVY--------- 127  Sulfolobus solfat...
15897226   81 -ITGKIEPTSNKNDIEk-ELkDFINAIARK---DSEFKFIIFTIVEKn---------KLGSSIIIYR------------- 133  Sulfolobus solfat...
15897329   73 vTAIAYALVISNNVGSt-LIlSTFLNLLGYy-aLATIIIGVILGISRrsfp---deiLLNVSRLNVSVNKKnaiy----g 143  Sulfolobus solfat...
13541210  154 -KSQDNPTLSEFFRI---VS-DVTSMRMFI---GEIENDAVRSLIK-----------SFISDRSYWREYSAs-------- 206  Thermoplasma volc...
13541470  107 nGKYVIVKNGSAKGIIikIStEYDNGEASFn-kLSKEIASLFKGIEAsltf--yaipEKVDVRIPCYNKDGlfg------ 177  Thermoplasma volc...
16081693   82 nHAESFLEIASFITDLlaSGiDVTAYSIPHaaeEAKNIAELNGKVYFstyvllwsqgRSEHELVQSINAVPlgneraglr 161  Thermoplasma acid...
16082224  135 -RNAEYPTISEFFSL---IA-SPVKTRQFI---SGLQDGPVKDLIQ-----------MFISDRSYWREYTAs-------- 187  Thermoplasma acid...
13471807  138 -TERGLQAAGERARIHr-VS-TVLNLEGLD---AENQMRRAAAFLGG----------LFEVARDHW--YPMl-------- 191  Mesorhizobium loti
16120093  433 vlVPSSEQLTVEGTRGTRAEQqsrnplpwpnpdliqqfqEGMEIGYALDENGe------pRPDPIQIPPDL-----LP-T 500  Halobacterium sp....
15678569  102 --IGSASQDLSADNRTIASLDk-----------------GEAIVSSIFTKFA--------VPVKIPLFEEF-----IE-S 148  Methanothermobact...
15897104  128 --IESLSQKIQALRIMIDSDPs-----------------NEKAKRKLELMETi------iSRIESGENPFR-----YE-M 176  Sulfolobus solfat...
15897226  134 --ILQHSTDIELDSFMEEVNN-------------------LLVLAKAIAPHLe------fKIIQPSKNVLP-----IP-M 180  Sulfolobus solfat...
15897329  144 glIVLISFLIFYEVLSSPFLFvg--------------siASFTLLFFISNDS--------IFPLIILSWFS-----FP-F 195  Sulfolobus solfat...
13541210  207 -tLNKILPLISDESVNDLVSSs----------------kNSLDLYTEMATAD--------RFVFVDVAKGK-----MP-S 255  Thermoplasma volc...
13541470  178 dfIYYRMFLVLWKRFVNEELLfdiink-------sqhrsSSIKLDANLSSEEfg-----lLKDLFDKNYTRmgsyySSkK 245  Thermoplasma volc...
16081693  162 ieLNDMDISRMRILFSDFRMRarkny---------isgsRNISIFSLVDAEKaifpsyceALEISDLNAAVk----FSaK 228  Thermoplasma acid...
16082224  188 -tLNKIIPVISSKNLSDLVSSr-----------------NPLDLYSVMSEGD--------RIVFVDVAKGK-----MP-A 235  Thermoplasma acid...
13471807  192 -vVVDEAQLFA-PAVAGEVSDe----------------aRKLSLGAMTNLMC--------R----GRKRG------LA-G 234  Mesorhizobium loti
16120093  501 HYGRFASTGGGKSKAIINDALSLREST--------------------------GGPVVLVDPKGdgmCENYLRCHYERFE 554  Halobacterium sp....
15678569  149 AGLESEDTDDDMIEFYRVGLSMyrfahlsdchlgaqkhpdlrelefeafrmalddalqkdvdfmiiagdlfhsnipnmet 228  Methanothermobact...
15897104  177 YIIINSRDKNSALSTASMIRQGLEGLGiktrl-----------------atlhEIQKLVRDFFHsklNLNKIALPTQIPY 239  Sulfolobus solfat...
15897226  181 AFGNYPFLTVSEITYTNPINSNIVSED---------------------------FDVEIGEATN---GTVTSRVGIRVKD 230  Sulfolobus solfat...
15897329  196 LFTQLSAYSVNEKGIELGSIEGVLAPSlvn---------------------riSNTKYGWKKFSn--LKFVLNFDGAKNY 252  Sulfolobus solfat...
13541210  256 EVSTQIAFLFLMKIWFDALVRYNRSGP--------------------------VKTYVVVDEAQn-vPPDILETILSEGR 308  Thermoplasma volc...
13541470  246 PFTIFKVMDANKTMFPGYCEAIELSKTncvvkfsmikapsnytgiisrkladiQYEIKEREKRGekpEYLQNLVESASRI 325  Thermoplasma volc...
16081693  229 HVDRKKLAKTASTKIADITFELKQRNSr------------------------kENTDYLKSVLNs--AEILSNESRKDTP 282  Thermoplasma acid...
16082224  236 DVSSQVSYLMLMKFWFDSLKRYREGKV--------------------------VNTYIFVDEAQn-iPTGILETILSEGR 288  Thermoplasma acid...
13471807  235 IIATQR-LAKLAKNVAAEASNFLMG-----------------------------RTFLDIDMAR---AADLLGMERRQAE 281  Mesorhizobium loti
16120093  555 GLDdvyhfrvpETIPAFS------------FFDIRPALEAGRN---REDAIQDKVDHFHDILRMImgreQYGQAFVANEI 619  Halobacterium sp....
15678569  229 vkratlelrrvreagvpiyvnygshdyspsstsmidilesagvidkvvrpipgkklgleftvdektgakitglsgrsrtl 308  Methanothermobact...
15897104  240 LTPisvekkpkSSIIIDGvllgk---dinnNGLVFWNITKSQNshlLIVGPTGSGKTEFLIWLSTilnlIYGGTVILFDV 316  Sulfolobus solfat...
15897226  231 ITRh-------IGIFGSTg----------sGKTNTAILLASQLnakGVKVIILDWHGEYDQLLKNgfriYDEKTIVKINP 293  Sulfolobus solfat...
15897329  253 NIVilgtsgsgKSSLAKSi-----------IGKFTDASFLVFDlhgEYEIEKAERIDISKNSLNPlslnGASPRQRALEV 321  Sulfolobus solfat...
13541210  309 KYG--------ISLILSNq-----------YISQ-MEGYSSA----VYGNVRNFISFLVSHEDAA----YLSRTVGNHPV 360  Thermoplasma volc...
13541470  326 IEKgrsp-gnyIVLTDLSflvysnnsmnlpRDANLFNDYIRMAglaVRNETSYKVLSAKHFLDFSnlgkAYPMDLLSAAS 404  Thermoplasma volc...
16081693  283 EAFlcsldfmvMSRTPYGlk---------rEISKLDRGLRIAGm-rARNLSYRASRSVQGFFDFTrentPYPMDASSAAS 352  Thermoplasma acid...
16082224  289 KYG--------MRLILSNq-----------YLDQ-ASAYQAA----LFGNVRNYISFQVSPSDAA----MLSRTINERSR 340  Thermoplasma acid...
13471807  282 AF----------RDLERGq-----------FMAL-GPALSRR----PLGLRIGPTDTSPRNGTPR----LMAMPEAALED 331  Mesorhizobium loti
16120093  620 LSYLIKALFDEEYGSDVFGLDDl---FAAALRMQR------EQTIPLVSADNQNIEESLTRHFAKDNHqfQVSMdav--- 687  Halobacterium sp....
15678569  309 eaeyfmkldrealeaedgfriflfhsaitqfkpvdladmesvdlnlfprgfeyyagghvhrkgcyieegygpivypgtlf 388  Methanothermobact...
15897104  317 KGDIKYRLSMYKVPFQLINPLFyrlgLLDEYDIPIr-----IKLLQIEKILLNSFRLSKFNSSILYNYlnRLIDisylky 391  Sulfolobus solfat...
15897226  294 LHLIDLDVEDTVDIIGDVLQLTdpqrFLLYTILLK------LKSYRKFSINQLLEVINSIEDTSYWMRdvKYALl----- 362  Sulfolobus solfat...
15897329  322 AYMLRSIFKLGNLQTIDIFNIImdtyAEKGIDENDesswnlTPPTFRDVLLMIERRKKLVDNSQDLSRlsSIEP------ 395  Sulfolobus solfat...
13541210  361 SRKLERILTTQSLH-KLVAWST------DGSYGPV------SLGFNVVPIAKDERIEESI---VEFGS---KGT------ 415  Thermoplasma volc...
13541470  405 MTPIYFSKEETKGIFIGFNEANgkpfFFDPFSAPSyn--iiVTGETGSGKSYFSRILAISFVEDMDRSvvILDPl----- 477  Thermoplasma volc...
16081693  353 FFPAYFSREETSGILIGINEYTgkpiYLDYFSHTSyn--siVTGETGSGKSYFAKVFSSRVFRAEYSKllILDPl----- 425  Thermoplasma acid...
16082224  341 AR-MTSVLTSQHLH-RFIVWSS------DQVLGPT------SLKFSPPSFTADDRISRSI---IKYGS--VEAP------ 395  Thermoplasma acid...
13471807  332 ARAIILAAPPPETV-RTPRRVA------SPDLLDQ------LM--AAKSAALEIRPEPA-------------EP------ 377  Mesorhizobium loti
16120093  688 ----gnRLDKLKEDAHLRRiFSHVPKQNDAGEYvdnrf---dfreFLDEDATIIFDLGDLRPEAQRAITLLLLSNlwdav 760  Halobacterium sp....
15678569  389 gsyagdleenargetrgyylveftdrarepefreirpaefeyiecdvtgknsqdayhqigreiaghdvtgkvvmlkirge 468  Methanothermobact...
15897104  392 rikwkdLEKYLSEIDDVQLkYYLSKLINILSSMedselppllhgvNENEINLIDLTLIKSEEIKRLIIYTLIQELynk-- 469  Sulfolobus solfat...
15897226  363 -----rKIFILFTPTASKLfSTVDETSLNDFPDyl--------tsSTIINLGFISNLKLRKLYSLFLIKLIVESYi---- 425  Sulfolobus solfat...
15897329  396 ------YIQFLANQILSGNsLNMKKIFESNIILdf--------skVTTDELKYVLIETILRDFRNYIYRRGISGLw---- 457  Sulfolobus solfat...
13541210  416 ------ERKTESEESDHSK-LISAFAKYLDGHGi----------qVNFGHAGKYIPDSFFYYGDRLFIVEAENSD----- 473  Thermoplasma volc...
13541470  478 ------DEYSCDCFNASCSvLDLRKSIFLDALKtggn----yeegKSSRTKVVIIKFEGRDKNKLSSIMDYIQAYfrsv- 546  Thermoplasma volc...
16081693  426 ------NEYHCTELGRSCMeTDLIGFLDLIRRAi----------tDVSLYRAIIIKYDLISAEKEATSGLMIAEAlsq-- 487  Thermoplasma acid...
16082224  396 ------EKDRESQNSLHAQ-LIMSFAQFLEGNGi----------kVQFGHFSNLIPDAHFYLNGRVYIIEAEVSD----- 453  Thermoplasma acid...
13471807  378 ------QISAEDLAERRER-VDRVLRAILAQPd------------AGFRVIGVLYQE--FVVRCRIEGLASVVPD----- 431  Mesorhizobium loti
16120093  761 qvrrrdGQTDYEKLTNLIIEEAa-----pVASTKLVSEQLLPQGRSFGLSMGLVMQFPEQVRNRNERayde----vlnNI 831  Halobacterium sp....
15678569  469 lssgrtsdidsasireklesmgarvvqinryglstreiqkvrvvesdvprlerrifreklagldirnrrlmeegdsiave 548  Methanothermobact...
15897104  470 ----fsLEKIYDKPRVFLVLDEawtilknESEDYPIVADLIKRGRGYGISIIMATQNLEDLGDLANIyl--------dNI 537  Sulfolobus solfat...
15897226  426 ------rYKINQQTLIILDEAQny----fNREGNEFIDRLASEIRKYNIGLCFITQSPSLLSQNVLK-----------NT 484  Sulfolobus solfat...
15897329  458 ------kFLVIDEAPFILSK----------ETGLEIVERLFAEVRKFGVGMILISQLTENIENIVQN------------S 509  Sulfolobus solfat...
13541210  474 -------IDHKERILDKLKHHNwrk-ivfLTKECDCERLVKLVYGSMPISEDGSIYRNSRNTIYLNDiaglyentwviCV 545  Thermoplasma volc...
13541470  547 ---dglKMVLIEEASILSKD----------REIGLLLENLTRQSRHFNTSVVIVSQSINDVKERYAIf---------eNS 604  Thermoplasma volc...
16081693  488 ----fmSKIDGRKTMIIDEANMvl----kNEDALRLVENTVRHSRHFETSVFIITQSISDIMFGNTIe---------eNS 550  Thermoplasma acid...
16082224  454 -------IDHPARILDKIRNYRnyn-vifITDDTRIQDLYNLVYARREISSDGTIQFAGSIRSHISEvsgifertwivSP 525  Thermoplasma acid...
13471807  432 -------LAEFRRMLTRARAG--------LGSETTQDDAWRDVSVRASLLPDD---MQGVFMMIARAake-----gwpCP 488  Mesorhizobium loti
16120093  832 KTKLIGNISIER------DLAESLAHEDLSPTDLRNRINTLPSGEwiaqLpsPSFGETGPPPFSLQPLPIapghpesdqp 905  Halobacterium sp....
15678569  549 llrrlenekapgenkseyekriiedagdvlgldlggdgt----------------------------------------- 587  Methanothermobact...
15897104  538 GVSVFMNNGDKK------FWEEIRRFVNVDNDTLSNNLIFMNRGEa------LVRFLGDPRPVIIKLNTLagssf----- 600  Sulfolobus solfat...
15897226  485 NIKIIHSIKSD-------VDKKAIRDTLSLDERLTQSLDKLDVGEa------IISAPNLKIPIIIKIKKIs--------- 542  Sulfolobus solfat...
15897329  510 SYIFIFNVVEPK------ELDYLSRVLSGSDRDKYEAIYQAIRSLe--rGyvVTVSGDNRAILLVKLNSLk--------- 572  Sulfolobus solfat...
13541210  546 GDKLTLRTLSKTysfnlrSLDEAPYMLSLKGGPLYTIKAAVYSEMk------TKRQFILNIDNITSLNNFt--------- 610  Thermoplasma volc...
13541470  605 VHSFMFRTKIKP-------TANTVLSSEDYDLSKLAGGKGMSYSEc-----iYVFGGASKKILVPKREHQly-------- 664  Thermoplasma volc...
16081693  551 VHRFFFRTASPEd-----DFQRYIPGTNDLSKLIGGKNHNLSECY-------YSYGGRYVKILITDVDTTls-------- 610  Thermoplasma acid...
16082224  526 QDRPKFHFSGRNrkltisALDETPFMRRLRQSKYGPTLIAIYDLMk------STNTYIFRKDEIISFFNFd--------- 590  Thermoplasma acid...
13471807  489 SDAAIARAYGs------hSLRRARRLLTYIEEQG---LIVCQLDGt------GKRTVTLV-ELAWATAPGd--------- 543  Mesorhizobium loti
16120093  906 ltepqkdhfksvsrprmvkrtqaqyglaeatesNTASEetgwgstgadtagSAADGDAAT 965  Halobacterium sp. NRC-1
15678569      ------------------------------------------------------------      Methanothermobacter thermautotrophicu...
15897104      ------------------------------------------------------------      Sulfolobus solfataricus
15897226      ------------------------------------------------------------      Sulfolobus solfataricus
15897329      ------------------------------------------------------------      Sulfolobus solfataricus
13541210  611 --------------------------------nDAIRR-------------FVVGRKIIS 625  Thermoplasma volcanium
13541470      ------------------------------------------------------------      Thermoplasma volcanium
16081693      ------------------------------------------------------------      Thermoplasma acidophilum
16082224  591 --------------------------------tDFIES-------------IFDKNGTIS 605  Thermoplasma acidophilum
13471807  544 --------------------------------pNAEEA-------------QQGSLAF-- 556  Mesorhizobium loti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap