3WCY,1AU1


Conserved Protein Domain Family
Interferon

?
pfam00143: Interferon (this model, PSSM-Id:395091 is obsolete and has been replaced by 459689)
Click on image for an interactive view with Cn3D
Interferon alpha/beta domain
Statistics
?
PSSM-Id: 395091
Aligned: 107 rows
Threshold Bit Score: 119.997
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3WCY_I         6 LQLQERTNIRKCQELL-EQLN---GKIN---LTYRADFKIPMEMT---EKM-QKSYTAFAIQEMLQNVFLVFRNNFSSTG 74  house mouse
XP_008101700  28 LLTRLREANQANLDVLhRNMG---PSISqqcIDDVFSFS-HREALg-nINVsEEGNAKAAIQEVLQQTGHIFKQNYTEMP 102 green anole
XP_008101702  28 LCSWLRQANQANLELLnSKMG---STIPqqcIEDVFSFS-PKEDLr-nLDVsEEENAKVAIQEVLQQTGHIFRQNRTEML 102 green anole
6_pfamImport   1 LEHQLGNINEKSIQAL-KEMG---GGFPvecVSQIIT-TFPVDAFk-tAENaKNEDIVLTGLETMRCVHNIFNKTGHPAT 74 
OCA21056      27 LHPKQEYLNTQILKAF-NEMMp-lKETEeicEEHPTDLPNTESTYs-vSQV-EA--GALAVREVLNETMRFYMKHHESMG 100 tropical clawed...
ANQ43258      51 LQPKQEYLNRQTLKTF-EEMNp-pEDYDescQYDSIELPNIDEIYs-iSQM-EE--MVLAVRGVLNETMRFYMKHHESMG 124 tropical clawed...
XP_019217788  26 MDDKFKQHNEETLKLL-DTMA----NNStniTEVEVTVPFPNHLYrqvSKS-SDEDKLAFTVQVLEEVAALFEEDHSSAS 99  Nile tilapia
XP_004937150  35 LRPQDATFSHDSLQLL-RDMA---PTLPqlcPQHNASCSFNDTILd-tS---NTQQADKTTHDILQHLFKILSSPSTPAH 106 chicken
XP_019465862  49 LRHQDANFSWKSLQLL-QKAA---PPPPqncPQQDVTYPFPETVLe-sK---DKKQAAIITLHILQQLFNILSSPHTPAH 120 turkey
XP_016846565  98 LRSRLRQASQVYLELLnSKMNstiSTIPqqcFEDVFNFS-PKMYLk-nLDVsEEENAKVVIQEVLQQTGHIFRQNYTEMP 175 green anole
3WCY_I        75 WNETIVVRLLDELHQQTVFLKTVLEEK-QEERL--TWEMSSTAL--HLKSYYWRVQ-RYLKLMKYNSYAWMVVRAEIFRN 148 house mouse
XP_008101700 103 WDEDSLRAFHAGLDQQSENLKSCLSASpRiq---------lTRL--RVKKYFRSLS-NLLKEKEYSRCAWEIIQIQVKQC 170 green anole
XP_008101702 103 WDEDSLRAFHAGLDQQSENLKSCLSASpRSQRIq------lTSL--RVKRYFRSLN-DFLKEKEYSRCAWEIVQIQVKQC 173 green anole
6_pfamImport  75 WEISELERFQGLLYRQIRQLTLCAGSEmKFSGEpnRLGVSV-----VLKTSFAKLE-KVLRDKDYSYCAWESVRRDLRRA 148
OCA21056     101 CKQQAWERFQQLLYYQIHQLEACVSQTeENDLLk-----------eSISEEFNLLE-TMVLEKDNSACVWDFIHLETRRN 168 tropical clawed...
ANQ43258     125 CKQQAWERFQQLLYYQINQLEACIPETaENPVFn-----------qTISDQYQALE-QILQEKN-TACTRDIIQSEIRGN 191 tropical clawed...
XP_019217788 100 WEDSTVRNFLNIVNKQAEELHSCIGSHsHKKKN--------SQLyfKTEMYFKRLSdDVLKKKGHSAEAWEVIRKETKAH 171 Nile tilapia
XP_004937150 107 WNDSQRQSLLNRIHRYTQHLEQCLDSSdTRSRTrwPRN---LHL--TIKKHFSCLH-TFLQDNDYSACAWEHVRLQARAW 180 chicken
XP_019465862 121 WIDHAHHSLLNQMQHYIHHLEQCFVDQgTRSQKqgPRN---SHL--SINKYFRSIH-NFLQRNNYSACSWDHVRLHARTC 194 turkey
XP_016846565 176 WDEDSLRVFHAGLDQQSENLKSCLSESpRSQRIq------lTRL--KVKKYFRSLS-DLLKEKGYSRCAWEIVHIQVKec 246 green anole
3WCY_I       149 FLIIRRLTRNF 159 house mouse
XP_008101700 171 FLWIEKIIQEI 181 green anole
XP_008101702 174 FLWIEKLiqmi 184 green anole
6_pfamImport 149 LEQFQEFLESN 159
OCA21056     169 LQQVLQLSSRL 179 tropical clawed frog
ANQ43258     192 LQLVGQLASRA 202 tropical clawed frog
XP_019217788 172 LMRAEPLASSL 182 Nile tilapia
XP_004937150 181 FLHIHNLTGNT 191 chicken
XP_019465862 195 FQNVDTLIQQM 205 turkey
XP_016846565 247 flwtdkliqti 257 green anole
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap